Stem-loop sequence hsa-mir-3663

Accession

MI0016064

Description

Homo sapiens miR-3663 stem-loop

Stem-loop

---   ggga         a      -      c             -   u 
   ccc    ccuuggucc ggcgcu ggucug guggugcucgggu gga a
   |||    ||||||||| |||||| |||||| ||||||||||||| |||  
   ggg    ggaaccagg ccgcgg ccggac caccacgagucua ucu a
cuc   ----         g      g      a             g   g 

Deep sequencing

6 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chr10: 118927189-118927285 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000050558 ; RP11-501J20.2-001; intron 1

  OTTHUMT00000050558 ; RP11-501J20.2-001; intron 1

  OTTHUMT00000050558 ; RP11-501J20.2-001; intron 1

  ENST00000419373 ; RP11-501J20.2-001; intron 1

  ENST00000419373 ; RP11-501J20.2-001; intron 1

  ENST00000419373 ; RP11-501J20.2-001; intron 1

Database links

• ENTREZGENE: 100500893;MIR3663

Mature sequence hsa-miR-3663-5p

• Accession: MIMAT0018084
• Sequence: 21 - gcuggucugcguggugcucgg - 41
• Deep sequencing: 5 reads, 2 experiments
• Evidence: experimental; Northern [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3663-5p
  • MIRDB:hsa-miR-3663-5p
  • RNA22-HSA:hsa-miR-3663-5p
  • TARGETMINER:hsa-miR-3663-5p

Mature sequence hsa-miR-3663-3p

• Accession: MIMAT0018085
• Sequence: 58 - ugagcaccacacaggccgggcgc - 80
• Evidence: experimental; Solexa [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3663-3p
  • MIRDB:hsa-miR-3663-3p
  • RNA22-HSA:hsa-miR-3663-3p
  • TARGETMINER:hsa-miR-3663-3p

References

1. PMID:20532037 "Re-inspection of small RNA sequence datasets reveals several novel human miRNA genes" Hansen TB, Bramsen JB, Kjems J PLoS One. 5:e10961(2010).
2. PMID:20498841 "Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers" Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ, Qu LH PLoS One. 5:e10563(2010).