Stem-loop sequence hsa-mir-3656

Accession

MI0016056

Description

Homo sapiens miR-3656 stem-loop

Stem-loop

     g   agcggga g       ag       ag 
cuuuc gcc       c gcauccg  gugggcu  g
||||| |||       | |||||||  |||||||  c
ggagg ugg       g cgugggc  ugcccgg  u
     g   ------g g       gg       gc 

Deep sequencing

148 reads, 24 experiments

Genome context

• Coordinates (GRCh37.p5): chr11: 118889654-118889722 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000389338 ; TRAPPC4-007; exon 1

  OTTHUMT00000389332 ; TRAPPC4-001; 3'UTR (exon 1)

  OTTHUMT00000389333 ; TRAPPC4-008; exon 1

  OTTHUMT00000389334 ; TRAPPC4-003; exon 1

  OTTHUMT00000389335 ; TRAPPC4-009; 3'UTR (exon 1)

  OTTHUMT00000389336 ; TRAPPC4-010; 3'UTR (exon 1)

  OTTHUMT00000389337 ; TRAPPC4-002; 3'UTR (exon 1)

  OTTHUMT00000389338 ; TRAPPC4-007; exon 1

  OTTHUMT00000389339 ; TRAPPC4-005; 3'UTR (exon 1)

  OTTHUMT00000389340 ; TRAPPC4-004; 3'UTR (exon 1)

  OTTHUMT00000389341 ; TRAPPC4-011; 3'UTR (exon 1)

  OTTHUMT00000389342 ; TRAPPC4-006; 3'UTR (exon 1)

  OTTHUMT00000389332 ; TRAPPC4-001; 3'UTR (exon 1)

  OTTHUMT00000389333 ; TRAPPC4-008; exon 1

  OTTHUMT00000389334 ; TRAPPC4-003; exon 1

  OTTHUMT00000389335 ; TRAPPC4-009; 3'UTR (exon 1)

  OTTHUMT00000389336 ; TRAPPC4-010; 3'UTR (exon 1)

  OTTHUMT00000389337 ; TRAPPC4-002; 3'UTR (exon 1)

  OTTHUMT00000389338 ; TRAPPC4-007; exon 1

  OTTHUMT00000389339 ; TRAPPC4-005; 3'UTR (exon 1)

  OTTHUMT00000389340 ; TRAPPC4-004; 3'UTR (exon 1)

  OTTHUMT00000389341 ; TRAPPC4-011; 3'UTR (exon 1)

  OTTHUMT00000389342 ; TRAPPC4-006; 3'UTR (exon 1)

  ENST00000531290 ; TRAPPC4-007; exon 1

  ENST00000533632 ; TRAPPC4-001; 3'UTR (exon 1)

  ENST00000527680 ; TRAPPC4-008; exon 1

  ENST00000447216 ; TRAPPC4-003; exon 1

  ENST00000528230 ; TRAPPC4-009; 3'UTR (exon 1)

  ENST00000525303 ; TRAPPC4-010; 3'UTR (exon 1)

  ENST00000434101 ; TRAPPC4-002; 3'UTR (exon 1)

  ENST00000531290 ; TRAPPC4-007; exon 1

  ENST00000359005 ; TRAPPC4-005; 3'UTR (exon 1)

  ENST00000533058 ; TRAPPC4-004; 3'UTR (exon 1)

  ENST00000525079 ; TRAPPC4-011; 3'UTR (exon 1)

  ENST00000533012 ; TRAPPC4-006; 3'UTR (exon 1)

  ENST00000533632 ; TRAPPC4-001; 3'UTR (exon 1)

  ENST00000527680 ; TRAPPC4-008; exon 1

  ENST00000447216 ; TRAPPC4-003; exon 1

  ENST00000528230 ; TRAPPC4-009; 3'UTR (exon 1)

  ENST00000525303 ; TRAPPC4-010; 3'UTR (exon 1)

  ENST00000434101 ; TRAPPC4-002; 3'UTR (exon 1)

  ENST00000531290 ; TRAPPC4-007; exon 1

  ENST00000359005 ; TRAPPC4-005; 3'UTR (exon 1)

  ENST00000533058 ; TRAPPC4-004; 3'UTR (exon 1)

  ENST00000525079 ; TRAPPC4-011; 3'UTR (exon 1)

  ENST00000533012 ; TRAPPC4-006; 3'UTR (exon 1)

Database links

• ENTREZGENE: 100500840;MIR3656

Mature sequence hsa-miR-3656

• Accession: MIMAT0018076
• Sequence: 49 - ggcgggugcgggggugg - 65
• Deep sequencing: 148 reads, 24 experiments
• Evidence: experimental; 454 [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3656
  • MIRDB:hsa-miR-3656
  • RNA22-HSA:hsa-miR-3656
  • TARGETMINER:hsa-miR-3656

References

1. PMID:20483914 "Discovery of microRNAs and other small RNAs in solid tumors" Meiri E, Levy A, Benjamin H, Ben-David M, Cohen L, Dov A, Dromi N, Elyakim E, Yerushalmi N, Zion O, Lithwick-Yanai G, Sitbon E Nucleic Acids Res. 38:6234-6246(2010).