Stem-loop sequence hsa-mir-3652

Accession

MI0016052

Description

Homo sapiens miR-3652 stem-loop

Stem-loop

cg  u   g  -  -    a    -a     -     --gggg    gag      cc  c a  -g   g 
  gc gga gu gu gagg uccg  accca ggggu      ggug   gcggcu  ug g uc  aag g
  || ||| || || |||| ||||  ||||| |||||      ||||   ||||||  || | ||  |||  
  cg ccu cg cg cucc gggu  ugggu ucccg      ccgc   cgccgg  ac c ag  uuc g
--  u   g  u  u    -    cg     g     ggagua    --a      cc  u -  ag   a 

Deep sequencing

11 reads, 8 experiments

Genome context

• Coordinates (GRCh37.p5): chr12: 104324203-104324333 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000407348 ; HSP90B1-006; intron 1

  OTTHUMT00000407349 ; HSP90B1-001; 3'UTR (exon 1)

  OTTHUMT00000407350 ; HSP90B1-007; exon 1

  OTTHUMT00000407351 ; HSP90B1-008; 3'UTR (exon 1)

  OTTHUMT00000407354 ; HSP90B1-003; exon 1

  OTTHUMT00000407348 ; HSP90B1-006; intron 1

  OTTHUMT00000407349 ; HSP90B1-001; 3'UTR (exon 1)

  OTTHUMT00000407350 ; HSP90B1-007; exon 1

  OTTHUMT00000407351 ; HSP90B1-008; 3'UTR (exon 1)

  OTTHUMT00000407354 ; HSP90B1-003; exon 1

  OTTHUMT00000407348 ; HSP90B1-006; intron 1

  OTTHUMT00000407349 ; HSP90B1-001; 3'UTR (exon 1)

  OTTHUMT00000407350 ; HSP90B1-007; exon 1

  OTTHUMT00000407351 ; HSP90B1-008; 3'UTR (exon 1)

  OTTHUMT00000407354 ; HSP90B1-003; exon 1

  ENST00000549334 ; HSP90B1-006; intron 1

  ENST00000299767 ; HSP90B1-001; 3'UTR (exon 1)

  ENST00000548622 ; HSP90B1-007; exon 1

  ENST00000540297 ; HSP90B1-008; 3'UTR (exon 1)

  ENST00000548462 ; HSP90B1-003; exon 1

  ENST00000421266 ; HSP90B1-201; 3'UTR (exon 1)

  ENST00000537375 ; HSP90B1-202; 3'UTR (exon 1)

  ENST00000549334 ; HSP90B1-006; intron 1

  ENST00000299767 ; HSP90B1-001; 3'UTR (exon 1)

  ENST00000548622 ; HSP90B1-007; exon 1

  ENST00000540297 ; HSP90B1-008; 3'UTR (exon 1)

  ENST00000548462 ; HSP90B1-003; exon 1

  ENST00000421266 ; HSP90B1-201; 3'UTR (exon 1)

  ENST00000537375 ; HSP90B1-202; 3'UTR (exon 1)

  ENST00000549334 ; HSP90B1-006; intron 1

  ENST00000299767 ; HSP90B1-001; 3'UTR (exon 1)

  ENST00000548622 ; HSP90B1-007; exon 1

  ENST00000540297 ; HSP90B1-008; 3'UTR (exon 1)

  ENST00000548462 ; HSP90B1-003; exon 1

Database links

• ENTREZGENE: 100500842;MIR3652

Mature sequence hsa-miR-3652

• Accession: MIMAT0018072
• Sequence: 1 - cggcuggaggugugagga - 18
• Evidence: experimental; 454 [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3652
  • MIRDB:hsa-miR-3652
  • RNA22-HSA:hsa-miR-3652
  • TARGETMINER:hsa-miR-3652

References

1. PMID:20483914 "Discovery of microRNAs and other small RNAs in solid tumors" Meiri E, Levy A, Benjamin H, Ben-David M, Cohen L, Dov A, Dromi N, Elyakim E, Yerushalmi N, Zion O, Lithwick-Yanai G, Sitbon E Nucleic Acids Res. 38:6234-6246(2010).