Stem-loop sequence hsa-mir-3650

Accession

MI0016050

Description

Homo sapiens miR-3650 stem-loop

Stem-loop

   -         u -         -ga u 
uca agguguguc g uagaguccu   c g
||| ||||||||| | |||||||||   | c
agu uuuacacgg c gucucgggg   g g
   c         u u         acc u 

Deep sequencing

1 reads, 1 experiments

Genome context

• Coordinates (GRCh37.p5): chr5: 38557604-38557663 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000367349 ; LIFR-002; intron 1

  OTTHUMT00000253823 ; LIFR-001; intron 1

  OTTHUMT00000367349 ; LIFR-002; intron 1

  OTTHUMT00000253823 ; LIFR-001; intron 1

  OTTHUMT00000367349 ; LIFR-002; intron 1

  OTTHUMT00000253823 ; LIFR-001; intron 1

  ENST00000263409 ; LIFR-001; intron 1

  ENST00000503088 ; LIFR-002; intron 1

  ENST00000263409 ; LIFR-001; intron 1

  ENST00000503088 ; LIFR-002; intron 1

  ENST00000263409 ; LIFR-001; intron 1

  ENST00000503088 ; LIFR-002; intron 1

  antisense

  OTTHUMT00000367341 ; CTD-2196P11.1-001; exon 1

  OTTHUMT00000367341 ; CTD-2196P11.1-001; exon 1

  OTTHUMT00000367341 ; CTD-2196P11.1-001; exon 1

  ENST00000500733 ; CTD-2196P11.1-001; exon 1

  ENST00000500733 ; LIFR-AS1-001; exon 1

  ENST00000500733 ; LIFR-AS1-001; exon 1

Database links

• ENTREZGENE: 100500824;MIR3650

Mature sequence hsa-miR-3650

• Accession: MIMAT0018070
• Sequence: 4 - aggugugucuguagagucc - 22
• Evidence: experimental; 454 [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3650
  • MIRDB:hsa-miR-3650
  • RNA22-HSA:hsa-miR-3650
  • TARGETMINER:hsa-miR-3650

References

1. PMID:20483914 "Discovery of microRNAs and other small RNAs in solid tumors" Meiri E, Levy A, Benjamin H, Ben-David M, Cohen L, Dov A, Dromi N, Elyakim E, Yerushalmi N, Zion O, Lithwick-Yanai G, Sitbon E Nucleic Acids Res. 38:6234-6246(2010).