Stem-loop sequence hsa-mir-3620

Accession

MI0016011

Description

Homo sapiens miR-3620 stem-loop

Stem-loop

g  a    g   cca      a u     gggc  gg  gg 
 ug ggug ggg   gcaggg g gggcu    ug  cu  g
 || |||| |||   |||||| | |||||    ||  ||  c
 ac ccac ccc   cguccc c uccgg    ac  gg  c
g  -    g   -ua      a -     ---a  au  aa 

Deep sequencing

17 reads, 6 experiments

Genome context

• Coordinates (GRCh37.p5): chr1: 228284964-228285042 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000091650 ; ARF1-001; intron 2

  OTTHUMT00000092127 ; ARF1-003; exon 2

  OTTHUMT00000092128 ; ARF1-004; intron 2

  OTTHUMT00000092130 ; ARF1-006; intron 2

  OTTHUMT00000092132 ; ARF1-008; intron 2

  OTTHUMT00000092131 ; ARF1-007; intron 2

  OTTHUMT00000092134 ; ARF1-010; intron 2

  OTTHUMT00000092133 ; ARF1-009; intron 2

  OTTHUMT00000092135 ; ARF1-011; intron 2

  OTTHUMT00000092136 ; ARF1-012; intron 2

  OTTHUMT00000091650 ; ARF1-001; intron 2

  OTTHUMT00000092126 ; ARF1-002; exon 2

  OTTHUMT00000092127 ; ARF1-003; exon 2

  OTTHUMT00000092128 ; ARF1-004; intron 2

  OTTHUMT00000092130 ; ARF1-006; intron 2

  OTTHUMT00000092132 ; ARF1-008; intron 2

  OTTHUMT00000092131 ; ARF1-007; intron 2

  OTTHUMT00000092134 ; ARF1-010; intron 2

  OTTHUMT00000092133 ; ARF1-009; intron 2

  OTTHUMT00000092135 ; ARF1-011; intron 2

  OTTHUMT00000092136 ; ARF1-012; intron 2

  OTTHUMT00000091650 ; ARF1-001; intron 2

  OTTHUMT00000092126 ; ARF1-002; exon 2

  OTTHUMT00000092127 ; ARF1-003; exon 2

  OTTHUMT00000092128 ; ARF1-004; intron 2

  OTTHUMT00000092130 ; ARF1-006; intron 2

  OTTHUMT00000092132 ; ARF1-008; intron 2

  OTTHUMT00000092131 ; ARF1-007; intron 2

  OTTHUMT00000092134 ; ARF1-010; intron 2

  OTTHUMT00000092133 ; ARF1-009; intron 2

  OTTHUMT00000092135 ; ARF1-011; intron 2

  OTTHUMT00000092136 ; ARF1-012; intron 2

  OTTHUMT00000092129 ; ARF1-005; intron 3

  OTTHUMT00000092129 ; ARF1-005; intron 3

  OTTHUMT00000092129 ; ARF1-005; intron 3

  ENST00000272102 ; ARF1-001; intron 2

  ENST00000470670 ; ARF1-003; exon 2

  ENST00000478424 ; ARF1-004; intron 2

  ENST00000470558 ; ARF1-006; intron 2

  ENST00000477451 ; ARF1-008; intron 2

  ENST00000478336 ; ARF1-007; intron 2

  ENST00000469235 ; ARF1-010; intron 2

  ENST00000482962 ; ARF1-009; intron 2

  ENST00000497165 ; ARF1-011; intron 2

  ENST00000490705 ; ARF1-012; intron 2

  ENST00000540651 ; ARF1-201; intron 2

  ENST00000542941 ; ARF1-203; intron 2

  ENST00000541182 ; ARF1-202; intron 2

  ENST00000272102 ; ARF1-001; intron 2

  ENST00000477821 ; ARF1-002; exon 2

  ENST00000470670 ; ARF1-003; exon 2

  ENST00000478424 ; ARF1-004; intron 2

  ENST00000470558 ; ARF1-006; intron 2

  ENST00000477451 ; ARF1-008; intron 2

  ENST00000478336 ; ARF1-007; intron 2

  ENST00000469235 ; ARF1-010; intron 2

  ENST00000482962 ; ARF1-009; intron 2

  ENST00000497165 ; ARF1-011; intron 2

  ENST00000490705 ; ARF1-012; intron 2

  ENST00000540651 ; ARF1-201; intron 2

  ENST00000542941 ; ARF1-203; intron 2

  ENST00000541182 ; ARF1-202; intron 2

  ENST00000272102 ; ARF1-001; intron 2

  ENST00000477821 ; ARF1-002; exon 2

  ENST00000470670 ; ARF1-003; exon 2

  ENST00000478424 ; ARF1-004; intron 2

  ENST00000470558 ; ARF1-006; intron 2

  ENST00000477451 ; ARF1-008; intron 2

  ENST00000478336 ; ARF1-007; intron 2

  ENST00000469235 ; ARF1-010; intron 2

  ENST00000482962 ; ARF1-009; intron 2

  ENST00000497165 ; ARF1-011; intron 2

  ENST00000490705 ; ARF1-012; intron 2

  ENST00000540651 ; ARF1-201; intron 2

  ENST00000541182 ; ARF1-202; intron 2

  ENST00000473949 ; ARF1-005; intron 3

  ENST00000473949 ; ARF1-005; intron 3

  ENST00000473949 ; ARF1-005; intron 3

Database links

• ENTREZGENE: 100500810;MIR3620

Mature sequence hsa-miR-3620-5p

• Accession: MIMAT0022967
• Sequence: 23 - gugggcugggcugggcugggcc - 44
• Deep sequencing: 17 reads, 6 experiments
• Evidence: not experimental

Mature sequence hsa-miR-3620-3p

• Accession: MIMAT0018001
• Previous IDs: hsa-miR-3620
• Sequence: 58 - ucacccugcaucccgcacccag - 79
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3620-3p
  • MIRDB:hsa-miR-3620-3p
  • RNA22-HSA:hsa-miR-3620-3p

References

1. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).