Stem-loop sequence hsa-mir-3607

Accession

MI0015997

Description

Homo sapiens miR-3607 stem-loop

Gene family

MIPF0001566; mir-3607

Stem-loop

aagguu cg      gu  ug    -aaau      ga   a 
      g  gugcau  ga  aagc     caguau  aug a
      |  ||||||  ||  ||||     ||||||  |||  
      c  caugua  cu  uucg     gucaua  uac u
---acu au      gu  --    caaau      -g   u 

Deep sequencing

51 reads, 12 experiments

Genome context

• Coordinates (GRCh37.p5): chr5: 85916314-85916392 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000239260 ; COX7C-001; intron 2

  OTTHUMT00000369746 ; COX7C-002; exon 2

  OTTHUMT00000369747 ; COX7C-003; intron 2

  OTTHUMT00000369749 ; COX7C-005; intron 2

  OTTHUMT00000369750 ; COX7C-006; intron 2

  OTTHUMT00000370322 ; COX7C-007; intron 2

  OTTHUMT00000239260 ; COX7C-001; intron 2

  OTTHUMT00000369746 ; COX7C-002; exon 2

  OTTHUMT00000369747 ; COX7C-003; intron 2

  OTTHUMT00000369749 ; COX7C-005; intron 2

  OTTHUMT00000369750 ; COX7C-006; intron 2

  OTTHUMT00000370322 ; COX7C-007; intron 2

  OTTHUMT00000239260 ; COX7C-001; intron 2

  OTTHUMT00000369746 ; COX7C-002; exon 2

  OTTHUMT00000369747 ; COX7C-003; intron 2

  OTTHUMT00000369749 ; COX7C-005; intron 2

  OTTHUMT00000369750 ; COX7C-006; intron 2

  OTTHUMT00000370322 ; COX7C-007; intron 2

  OTTHUMT00000369748 ; COX7C-004; intron 3

  OTTHUMT00000369748 ; COX7C-004; intron 3

  OTTHUMT00000369748 ; COX7C-004; intron 3

  ENST00000247655 ; COX7C-001; intron 2

  ENST00000511472 ; COX7C-005; intron 2

  ENST00000509578 ; COX7C-002; exon 2

  ENST00000515763 ; COX7C-006; intron 2

  ENST00000513124 ; COX7C-007; intron 2

  ENST00000510447 ; COX7C-003; intron 2

  ENST00000247655 ; COX7C-001; intron 2

  ENST00000511472 ; COX7C-005; intron 2

  ENST00000509578 ; COX7C-002; exon 2

  ENST00000515763 ; COX7C-006; intron 2

  ENST00000513124 ; COX7C-007; intron 2

  ENST00000510447 ; COX7C-003; intron 2

  ENST00000247655 ; COX7C-001; intron 2

  ENST00000511472 ; COX7C-005; intron 2

  ENST00000509578 ; COX7C-002; exon 2

  ENST00000515763 ; COX7C-006; intron 2

  ENST00000513124 ; COX7C-007; intron 2

  ENST00000510447 ; COX7C-003; intron 2

  ENST00000505430 ; COX7C-004; intron 3

  ENST00000505430 ; COX7C-004; intron 3

  ENST00000505430 ; COX7C-004; intron 3

Database links

• ENTREZGENE: 100500805;MIR3607

Mature sequence hsa-miR-3607-5p

• Accession: MIMAT0017984
• Sequence: 12 - gcaugugaugaagcaaaucagu - 33
• Deep sequencing: 50 reads, 11 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3607-5p
  • MIRDB:hsa-miR-3607-5p
  • RNA22-HSA:hsa-miR-3607-5p
  • TARGETMINER:hsa-miR-3607-5p

Mature sequence hsa-miR-3607-3p

• Accession: MIMAT0017985
• Sequence: 51 - acuguaaacgcuuucugaug - 70
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3607-3p
  • MIRDB:hsa-miR-3607-3p
  • RNA22-HSA:hsa-miR-3607-3p
  • TARGETMINER:hsa-miR-3607-3p

References

1. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).