Stem-loop sequence bta-mir-3604-2

Accession

MI0015951 (change log)

Description

Bos taurus miR-3604-2 stem-loop

Gene family

MIPF0001050; mir-3604

Literature search

1 open access papers mention bta-mir-3604-2
(1 sentences)

Stem-loop

   ca c   a   a   gc      -    acaau ug    
5'   g cua cca ugu  agacua cugu     u  gga 
     | ||| ||| |||  |||||| ||||     |  || g
3'   c gau ggu aca  ucugau gaca     a  ccu 
   gg a   g   c   aa      a    ----- gu    

Deep sequencing

3 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr11: 99127781-99127853 [+]
• Overlapping transcripts:

  sense

  ENSBTAT00000032743 ; DNM1-201; intron 15

  antisense

  ENSBTAT00000042353 ; bta-mir-199b-201; exon 1

Clustered miRNAs

< 10kb from bta-mir-3604-2

• bta-mir-199b: chr11: 99127762-99127861 [-]
• bta-mir-3604-2: chr11: 99127781-99127853 [+]
• bta-mir-3154: chr11: 99127964-99128048 [-]

Database links

• EntrezGene:MIR3604-2
• miRBase Tracker:MI0015951

Mature sequence bta-miR-3604

• Accession: MIMAT0016939
• Sequence: 6 - uaaccaaugugcagacuacugu - 27
• Deep sequencing: 6 reads, 3 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-3604

References

1. PMID:19765282 "Identification and characterization of miRNAs expressed in the bovine ovary" Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D BMC Genomics. 10:443(2009).