Stem-loop sequence ssc-mir-494

Accession

MI0015934 (change log)

Description

Sus scrofa miR-494 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

3 open access papers mention ssc-mir-494
(3 sentences)

Stem-loop

   ---   ga          -g      -   c   -  uuu 
5'    cuc  aggagagguu  ucgugu ugu uuc uc   a
      |||  ||||||||||  |||||| ||| ||| ||   c
3'    gag  uuuucuccaa  ggcaca aca aag ag   u
   uau   -g          ag      u   -   u  uau 

Deep sequencing

123 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

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Database links

• EntrezGene:MIR494
• miRBase Tracker:MI0015934

Mature sequence ssc-miR-494

• Accession: MIMAT0017979
• Sequence: 11 - agguugucguguugucuucucu - 32
• Evidence: experimental; Illumina [1]

References

1. PMID:20433717 "Deciphering the porcine intestinal microRNA transcriptome" Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R BMC Genomics. 11:275(2010).