Stem-loop sequence ssc-mir-146a

Accession

MI0015926 (change log)

Description

Sus scrofa miR-146a stem-loop

Gene family

MIPF0000103; mir-146

Literature search

25 open access papers mention ssc-mir-146a
(209 sentences)

Stem-loop

   ---ua       uu            c        g  uc 
5'      cucagcu  gagaacugaauu cauggguu ug  a
        |||||||  |||||||||||| |||||||| ||  u
3'      gggucga  uucuugauuuga guguccag ac  u
   cuaua       -c            a        -  ug 

Deep sequencing

5856 reads, 773 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Sscrofa10.2; GCA_000003025.4)	Overlapping transcripts
chr16: 68394520-68394597 [-]	sense ENSSSCT00000018545 ; SLU7-201; intron 6
chr16: 68488129-68488206 [+]	sense ENSSSCT00000018545 ; SLU7-201; intron 6

Database links

• EntrezGene:MIR146A
• miRBase Tracker:MI0015926

Mature sequence ssc-miR-146a-5p

• Accession: MIMAT0022963
• Sequence: 11 - ugagaacugaauuccauggguu - 32
• Deep sequencing: 5853 reads, 15 experiments
• Evidence: experimental; Illumina [2]

Mature sequence ssc-miR-146a-3p

• Accession: MIMAT0017971
• Previous IDs: ssc-miR-146a
• Sequence: 47 - ccugugaaguuuaguucuucag - 68
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1-2]

References

1. PMID:20433717 "Deciphering the porcine intestinal microRNA transcriptome" Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R BMC Genomics. 11:275(2010).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).