Stem-loop sequence hsa-mir-500b

Accession MI0015903
Description Homo sapiens miR-500b stem-loop
Gene family MIPF0000139; mir-500
Stem-loop 
-      cu -u         uac       ag g   uuu 
 cccccu  c  aauccuugc   cugggug  a ugc   c
 ||||||  |  |||||||||   |||||||  | |||   u
 ggggga  g  uuaggaacg   gacccac  u acg   g
a      ac uc         ---       -g g   uaa
Get sequence
Deep sequencing
208 reads, 22 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chrX: 49775280-49775358 [+]
sense
OTTHUMT00000056542 ; CLCN5-001; intron 3
OTTHUMT00000056543 ; CLCN5-002; intron 3
OTTHUMT00000109349 ; CLCN5-005; intron 3
OTTHUMT00000056542 ; CLCN5-001; intron 3
OTTHUMT00000056543 ; CLCN5-002; intron 3
OTTHUMT00000109349 ; CLCN5-005; intron 3
OTTHUMT00000056542 ; CLCN5-001; intron 3
OTTHUMT00000056543 ; CLCN5-002; intron 3
OTTHUMT00000109349 ; CLCN5-005; intron 3
ENST00000458843 ; MIR500B-201; exon 1
ENST00000458843 ; MIR500B-201; exon 1
ENST00000458843 ; MIR500B-201; exon 1
ENST00000376088 ; CLCN5-001; intron 3
ENST00000376091 ; CLCN5-002; intron 3
ENST00000482218 ; CLCN5-005; intron 3
ENST00000450422 ; CLCN5-201; intron 3
ENST00000376088 ; CLCN5-001; intron 3
ENST00000376091 ; CLCN5-002; intron 3
ENST00000482218 ; CLCN5-005; intron 3
ENST00000450422 ; CLCN5-201; intron 3
ENST00000376088 ; CLCN5-001; intron 3
ENST00000376091 ; CLCN5-002; intron 3
ENST00000482218 ; CLCN5-005; intron 3
Clustered miRNAs
< 10kb from hsa-mir-500b
hsa-mir-532 chrX: 49767754-49767844 [+]
hsa-mir-188 chrX: 49768109-49768194 [+]
hsa-mir-500a chrX: 49773039-49773122 [+]
hsa-mir-362 chrX: 49773572-49773636 [+]
hsa-mir-501 chrX: 49774330-49774413 [+]
hsa-mir-500b chrX: 49775280-49775358 [+]
hsa-mir-660 chrX: 49777849-49777945 [+]
hsa-mir-502 chrX: 49779206-49779291 [+]
Database links

Mature sequence hsa-miR-500b

Accession MIMAT0016925
Sequence

11 -  

aauccuugcuaccugggu

 - 28

Get sequence
Deep sequencing 167 reads, 22 experiments
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:19784364 "Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors" Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP PLoS One. 4:e7192(2009).