Stem-loop sequence hsa-mir-4270

Accession

MI0015878

Description

Homo sapiens miR-4270 stem-loop

Stem-loop

---a  aauag    aggg  u           agaa 
    ca     cuuc    ag caggggagggc    a
    ||     ||||    || |||||||||||    u
    gu     gaag    uc guccccuuccg    a
cugg  -gaaa    --gg  -           guag 

Deep sequencing

4 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chr3: 15537746-15537815 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000343575 ; COLQ-001; intron 1

  OTTHUMT00000343577 ; COLQ-003; intron 1

  OTTHUMT00000343576 ; COLQ-002; intron 1

  OTTHUMT00000346318 ; COLQ-007; intron 1

  OTTHUMT00000343578 ; COLQ-004; intron 1

  OTTHUMT00000343575 ; COLQ-001; intron 1

  OTTHUMT00000343577 ; COLQ-003; intron 1

  OTTHUMT00000343576 ; COLQ-002; intron 1

  OTTHUMT00000346318 ; COLQ-007; intron 1

  OTTHUMT00000343578 ; COLQ-004; intron 1

  OTTHUMT00000343575 ; COLQ-001; intron 1

  OTTHUMT00000343577 ; COLQ-003; intron 1

  OTTHUMT00000343576 ; COLQ-002; intron 1

  OTTHUMT00000346318 ; COLQ-007; intron 1

  OTTHUMT00000343578 ; COLQ-004; intron 1

  ENST00000383788 ; COLQ-001; intron 1

  ENST00000420589 ; COLQ-003; intron 1

  ENST00000454772 ; COLQ-002; intron 1

  ENST00000383786 ; COLQ-007; intron 1

  ENST00000430319 ; COLQ-004; intron 1

  ENST00000383787 ; COLQ-203; intron 1

  ENST00000383781 ; COLQ-201; intron 1

  ENST00000435459 ; COLQ-204; intron 1

  ENST00000383785 ; COLQ-202; intron 1

  ENST00000383788 ; COLQ-001; intron 1

  ENST00000420589 ; COLQ-003; intron 1

  ENST00000454772 ; COLQ-002; intron 1

  ENST00000383786 ; COLQ-007; intron 1

  ENST00000430319 ; COLQ-004; intron 1

  ENST00000383787 ; COLQ-203; intron 1

  ENST00000383781 ; COLQ-201; intron 1

  ENST00000435459 ; COLQ-204; intron 1

  ENST00000383785 ; COLQ-202; intron 1

  ENST00000383788 ; COLQ-001; intron 1

  ENST00000420589 ; COLQ-003; intron 1

  ENST00000454772 ; COLQ-002; intron 1

  ENST00000383786 ; COLQ-007; intron 1

  ENST00000430319 ; COLQ-004; intron 1

  ENST00000383787 ; COLQ-203; intron 1

  ENST00000383781 ; COLQ-201; intron 1

  ENST00000435459 ; COLQ-204; intron 1

  ENST00000383785 ; COLQ-202; intron 1

Database links

• ENTREZGENE: 100422868;MIR4270

Mature sequence hsa-miR-4270

• Accession: MIMAT0016900
• Sequence: 11 - ucagggagucaggggagggc - 30
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4270
  • MICRORNA.ORG:hsa-miR-4270
  • MIRDB:hsa-miR-4270
  • RNA22-HSA:hsa-miR-4270
  • TARGETMINER:hsa-miR-4270

References

1. PMID:19784364 "Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors" Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP PLoS One. 4:e7192(2009).