Stem-loop sequence hsa-mir-4254

Accession

MI0015862

Description

Homo sapiens miR-4254 stem-loop

Stem-loop

---c     a    --              ucu    uga 
    uuggg ggag  ggugggguggcucc   gcag   g
    ||||| ||||  ||||||||||||||   ||||   u
    gaccc ccuc  ccaccucaucgagg   cguc   a
cccc     -    ua              -uc    ugg 

Deep sequencing

6 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr1: 32224261-32224336 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000313753 ; BAI2-006; intron 1

  OTTHUMT00000313756 ; BAI2-009; intron 1

  OTTHUMT00000381838 ; BAI2-015; intron 1

  OTTHUMT00000011084 ; BAI2-001; intron 1

  OTTHUMT00000313755 ; BAI2-008; intron 1

  OTTHUMT00000381843 ; BAI2-016; intron 1

  OTTHUMT00000313759 ; BAI2-012; intron 1

  OTTHUMT00000313753 ; BAI2-006; intron 1

  OTTHUMT00000313756 ; BAI2-009; intron 1

  OTTHUMT00000381838 ; BAI2-015; intron 1

  OTTHUMT00000011084 ; BAI2-001; intron 1

  OTTHUMT00000313755 ; BAI2-008; intron 1

  OTTHUMT00000381843 ; BAI2-016; intron 1

  OTTHUMT00000313759 ; BAI2-012; intron 1

  OTTHUMT00000313753 ; BAI2-006; intron 1

  OTTHUMT00000313756 ; BAI2-009; intron 1

  OTTHUMT00000381838 ; BAI2-015; intron 1

  OTTHUMT00000011084 ; BAI2-001; intron 1

  OTTHUMT00000313755 ; BAI2-008; intron 1

  OTTHUMT00000381843 ; BAI2-016; intron 1

  OTTHUMT00000313759 ; BAI2-012; intron 1

  ENST00000398556 ; BAI2-006; intron 1

  ENST00000398547 ; BAI2-009; intron 1

  ENST00000373658 ; BAI2-015; intron 1

  ENST00000373655 ; BAI2-001; intron 1

  ENST00000398542 ; BAI2-008; intron 1

  ENST00000533175 ; BAI2-016; intron 1

  ENST00000436464 ; BAI2-012; intron 1

  ENST00000257070 ; BAI2-201; intron 1

  ENST00000398556 ; BAI2-006; intron 1

  ENST00000398547 ; BAI2-009; intron 1

  ENST00000373658 ; BAI2-015; intron 1

  ENST00000373655 ; BAI2-001; intron 1

  ENST00000398542 ; BAI2-008; intron 1

  ENST00000533175 ; BAI2-016; intron 1

  ENST00000436464 ; BAI2-012; intron 1

  ENST00000257070 ; BAI2-201; intron 1

  ENST00000398556 ; BAI2-006; intron 1

  ENST00000398547 ; BAI2-009; intron 1

  ENST00000373658 ; BAI2-015; intron 1

  ENST00000373655 ; BAI2-001; intron 1

  ENST00000398542 ; BAI2-008; intron 1

  ENST00000533175 ; BAI2-016; intron 1

  ENST00000436464 ; BAI2-012; intron 1

  ENST00000257070 ; BAI2-201; intron 1

Database links

• ENTREZGENE: 100423028;MIR4254

Mature sequence hsa-miR-4254

• Accession: MIMAT0016884
• Sequence: 44 - gccuggagcuacuccaccaucuc - 66
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4254
  • MICRORNA.ORG:hsa-miR-4254
  • MIRDB:hsa-miR-4254
  • RNA22-HSA:hsa-miR-4254
  • TARGETMINER:hsa-miR-4254

References

1. PMID:19784364 "Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors" Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP PLoS One. 4:e7192(2009).