Stem-loop sequence hsa-mir-4258

Accession

MI0015857

Description

Homo sapiens miR-4258 stem-loop

Stem-loop

-    -          ---    cc    -----u           ucuu 
 acgc cccccgcccc   gcca  gccu      ggaggcugacc    a
 |||| ||||||||||   ||||  ||||      |||||||||||     
 ugug gggggcgggg   uggu  cggg      cuucuggcugg    c
c    a          guu    -u    ucccuu           cuuu 

Deep sequencing

3 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chr1: 154948169-154948259 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000091079 ; CKS1B-002; intron 1

  OTTHUMT00000091080 ; CKS1B-003; intron 1

  OTTHUMT00000091078 ; CKS1B-001; intron 1

  OTTHUMT00000091081 ; CKS1B-004; intron 1

  OTTHUMT00000098998 ; CKS1B-006; intron 1

  OTTHUMT00000098999 ; CKS1B-007; intron 1

  OTTHUMT00000091079 ; CKS1B-002; intron 1

  OTTHUMT00000091080 ; CKS1B-003; intron 1

  OTTHUMT00000091078 ; CKS1B-001; intron 1

  OTTHUMT00000091081 ; CKS1B-004; intron 1

  OTTHUMT00000098998 ; CKS1B-006; intron 1

  OTTHUMT00000098999 ; CKS1B-007; intron 1

  OTTHUMT00000091079 ; CKS1B-002; intron 1

  OTTHUMT00000091080 ; CKS1B-003; intron 1

  OTTHUMT00000091078 ; CKS1B-001; intron 1

  OTTHUMT00000091081 ; CKS1B-004; intron 1

  OTTHUMT00000098998 ; CKS1B-006; intron 1

  OTTHUMT00000098999 ; CKS1B-007; intron 1

  ENST00000368439 ; CKS1B-002; intron 1

  ENST00000368436 ; CKS1B-003; intron 1

  ENST00000308987 ; CKS1B-001; intron 1

  ENST00000477676 ; CKS1B-004; intron 1

  ENST00000474215 ; CKS1B-006; intron 1

  ENST00000473344 ; CKS1B-007; intron 1

  ENST00000368439 ; CKS1B-002; intron 1

  ENST00000368436 ; CKS1B-003; intron 1

  ENST00000308987 ; CKS1B-001; intron 1

  ENST00000477676 ; CKS1B-004; intron 1

  ENST00000474215 ; CKS1B-006; intron 1

  ENST00000473344 ; CKS1B-007; intron 1

  ENST00000368439 ; CKS1B-002; intron 1

  ENST00000368436 ; CKS1B-003; intron 1

  ENST00000308987 ; CKS1B-001; intron 1

  ENST00000477676 ; CKS1B-004; intron 1

  ENST00000474215 ; CKS1B-006; intron 1

  ENST00000473344 ; CKS1B-007; intron 1

Database links

• ENTREZGENE: 100423020;MIR4258

Mature sequence hsa-miR-4258

• Accession: MIMAT0016879
• Sequence: 11 - ccccgccaccgccuugg - 27
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4258
  • MICRORNA.ORG:hsa-miR-4258
  • MIRDB:hsa-miR-4258
  • RNA22-HSA:hsa-miR-4258
  • TARGETMINER:hsa-miR-4258

References

1. PMID:19784364 "Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors" Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP PLoS One. 4:e7192(2009).