Stem-loop sequence aly-MIR841

Accession MI0015780
Description Arabidopsis lyrata miR841 stem-loop
Gene family MIPF0001112; MIR841
Stem-loop 
g      c  u        c   a   a              c               cu       a  a            ---  -  a  ag    ---a     c 
 caccaa uc accaugug aga acu uggucuugaguugc ugugaauacgaccca  ggaaacu aa uaaacaaagaaa   ca gu uc  ugug    aauuu a
 |||||| || |||||||| ||| ||| |||||||||||||| |||||||||||||||  ||||||| || ||||||||||||   || || ||  ||||    |||||  
 gugguu ag ugguacac ucu uga accaggacucaacg acacuuaugcugggu  uuuuuga uu auuuguuucuuu   gu ca ag  acau    uuaaa u
-      c  c        a   a   g              u               ag       c  c            aaa  a  g  aa    gaga     a
Get sequence
Deep sequencing
1 reads, 1 experiments

Mature sequence aly-miR841

Accession MIMAT0017907
Sequence

50 -  

uacgacccacuggaaacuaaa

 - 70

Get sequence
Evidence experimental; SOLiD [1]

References

1
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).