Stem-loop sequence cin-mir-4103

Accession

MI0015657 (change log)

Description

Ciona intestinalis miR-4103 stem-loop

Stem-loop

   ac  -   gu    ga   a 
5'   ca cgg  cugu  cgu g
     || |||  ||||  |||  
3'   gu gcc  ggcg  gcg c
   -u  c   ug    uc   a 

Deep sequencing

48 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2): scaffold_152: 133193-133232 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir4103
• miRBase Tracker:MI0015657

Mature sequence cin-miR-4103-3p

• Accession: MIMAT0016690
• Sequence: 23 - gcgcugcggguccgcugu - 40
• Deep sequencing: 48 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).