Stem-loop sequence cin-mir-4070

Accession MI0015621
Description Ciona intestinalis miR-4070 stem-loop
Stem-loop 
u   a       ca   a      -c  ca 
 cga uguuaug  ggc cgugca  gu  u
 ||| |||||||  ||| ||||||  ||   
 gcu acagugc  cug gcacgu  cg  a
-   -       -a   c      au  ag
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Genome context
Coordinates (JGI2) Overlapping transcripts
5q: 864845-864902 [-]
intergenic
Clustered miRNAs
< 10kb from cin-mir-4070
cin-mir-4086 5q: 864977-865032 [-]
cin-mir-4070 5q: 864845-864902 [-]
cin-mir-4066 5q: 864513-864560 [-]
cin-mir-4085 5q: 863886-863941 [-]
cin-mir-4056 5q: 863632-863684 [-]
Database links

Mature sequence cin-miR-4070-5p

Accession MIMAT0016628
Sequence

1 -  

ucgaauguuaugcaggcacgug

 - 22

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Evidence experimental; Solexa [1]

Mature sequence cin-miR-4070-3p

Accession MIMAT0016629
Sequence

40 -  

cacgcgucacgugacaucg

 - 58

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Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).