Stem-loop sequence cin-mir-4003a-2

Accession MI0015525
Description Ciona intestinalis miR-4003a-2 stem-loop
Gene family MIPF0000840; mir-4003
Stem-loop 
uga        uac        ---g    u 
   guugguua   auucuugc    auau u
   ||||||||   ||||||||    ||||  
   caaccaau   uaagaacg    uaug a
aca        -uu        auaa    a
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Genome context
Coordinates (JGI2) Overlapping transcripts
7q: 6168087-6168146 [-]
intergenic
Clustered miRNAs
< 10kb from cin-mir-4003a-2
cin-mir-4077c 7q: 6168570-6168624 [-]
cin-mir-4003a-3 7q: 6168261-6168320 [-]
cin-mir-4003a-2 7q: 6168087-6168146 [-]
cin-mir-4005a 7q: 6166955-6167009 [-]
cin-mir-4077d 7q: 6165860-6165915 [-]
cin-mir-4077d 7q: 6153229-6153284 [-]
Database links

Mature sequence cin-miR-4003a-5p

Accession MIMAT0016461
Sequence

1 -  

ugaguugguuauacauucuu

 - 20

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Evidence experimental; Solexa [1]

Mature sequence cin-miR-4003a-3p

Accession MIMAT0016462
Sequence

41 -  

caagaauuuuaaccaacaca

 - 60

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Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).