Stem-loop sequence rno-mir-3595

AccessionMI0015478 (change log)
DescriptionRattus norvegicus miR-3595 stem-loop
Gene family MIPF0000091; mir-368
Stem-loop
   g   uu  ccaagcagca       cug    c            -   c  uua  -  uu 
5'  ugg  uc          uuugaua   aaaa guggauuuuccu cua ga   gu ca  a
    |||  ||          |||||||   |||| |||||||||||| ||| ||   || ||  a
3'  acc  ag          aaacuau   uuuu caucuaagagga gau cu   ca gu  u
   g   -u  -cucaacaag       aaa    c            a   a  ---  u  ua 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr6: 133873587-133873706 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-3595
rno-mir-544chr6: 133879169-133879246 [+]
rno-mir-6331chr6: 133878578-133878700 [+]
rno-mir-539chr6: 133877832-133877907 [+]
rno-mir-3576chr6: 133877812-133877926 [-]
rno-mir-487bchr6: 133877124-133877205 [+]
rno-mir-381chr6: 133876615-133876675 [+]
rno-mir-300chr6: 133874152-133874230 [+]
rno-mir-376achr6: 133873605-133873686 [+]
rno-mir-3595chr6: 133873587-133873706 [-]
rno-mir-376bchr6: 133873095-133873180 [+]
rno-mir-376cchr6: 133872439-133872522 [+]
rno-mir-667chr6: 133869570-133869661 [+]
rno-mir-495chr6: 133868288-133868367 [+]
rno-mir-543chr6: 133866660-133866739 [+]
rno-mir-666chr6: 133866523-133866621 [+]
rno-mir-1193chr6: 133864698-133864817 [+]
rno-mir-679chr6: 133864564-133864700 [+]
rno-mir-494chr6: 133864370-133864452 [+]
Database links

Mature sequence rno-miR-3595

Accession MIMAT0017903
Sequence

34 - 

guggauuuuccucuacgau

 - 52

Get sequence
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).