Stem-loop sequence rno-mir-3586

Accession

MI0015461

Description

Rattus norvegicus miR-3586 stem-loop

Gene family

MIPF0000057; mir-28

Stem-loop

c   -ag u      --------  -  -auc         a      - u          ggga g 
 ggg   g gaguau        ga cg    ccuguccuc aggagc c cagucuagua    g a
 |||   | ||||||        || ||    ||||||||| |||||| | ||||||||||    |  
 ccc   c cucgug        cu gc    ggacgggag uccucg g gucagaucau    c g
a   gua -      ucuacuac  c  gaaa         c      a u          ---a a 

Genome context

• Coordinates (RGSC3.4): 7: 110979296-110979415 [+]
• Overlapping transcripts:

  antisense

  ENSRNOT00000011219 ; Ptk2; intron 21

  ENSRNOT00000011219 ; Ptk2; intron 21

  ENSRNOT00000011219 ; Ptk2; intron 21

  ENSRNOT00000010896 ; D3ZA04_RAT; intron 22

  ENSRNOT00000010896 ; D3ZA04_RAT; intron 22

  ENSRNOT00000010896 ; D3ZA04_RAT; intron 22

  ENSRNOT00000046362 ; D3ZUD6_RAT; intron 23

  ENSRNOT00000046362 ; D3ZUD6_RAT; intron 23

  ENSRNOT00000046362 ; D3ZUD6_RAT; intron 23

  ENSRNOT00000065308 ; D3ZJ71_RAT; intron 24

  ENSRNOT00000065308 ; D3ZJ71_RAT; intron 24

  ENSRNOT00000065308 ; D3ZJ71_RAT; intron 24

Clustered miRNAs

< 10kb from rno-mir-3586

• rno-mir-3586: 7: 110979296-110979415 [+]
• rno-mir-151: 7: 110979296-110979392 [-]

Database links

• ENTREZGENE: 100526641;Mir3586

Mature sequence rno-miR-3586-5p

• Accession: MIMAT0017880
• Sequence: 20 - ucccuguccucaaggag - 36
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • MIRDB:rno-miR-3586-5p

Mature sequence rno-miR-3586-3p

• Accession: MIMAT0017881
• Sequence: 60 - auacuagacugugagcuccucga - 82
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • MIRDB:rno-miR-3586-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).