Stem-loop sequence rno-mir-9b-2

AccessionMI0015439 (change log)
Previous IDsrno-mir-3597-2
DescriptionRattus norvegicus miR-9b-2 stem-loop
Gene family MIPF0000014; mir-9
Literature search

71 open access papers mention rno-mir-9b-2
(607 sentences)

Stem-loop
   a   cu   cg    ucuu    -     u   -    c            u     agacc 
5'  gca  ccu  guga    gaag gaguu uua cuuu gguuaucuagcu uauga     a
    |||  |||  ||||    |||| ||||| ||| |||| |||||||||||| |||||      
3'  ugu  gga  cacu    cuuc cucaa aau gaaa ccaauagaucga auacu     a
   -   -c   -a    --cc    g     c   a    -            c     cacau 
Get sequence
Deep sequencing
1629 reads, 0 reads per million, 103 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr2: 11884658-11884775 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-9b-2
rno-mir-9a-2chr2: 11884671-11884757 [+]
rno-mir-9b-2chr2: 11884658-11884775 [-]
Database links

Mature sequence rno-miR-9b-5p

Accession MIMAT0017835
Previous IDsrno-miR-3597-5p
Sequence

35 - 

uucgguuaucuagcuuuau

 - 53

Get sequence
Deep sequencing4425 reads, 102 experiments
Evidence experimental; SOLiD [1]
Predicted targets

Mature sequence rno-miR-9b-3p

Accession MIMAT0017836
Previous IDsrno-miR-3597-3p
Sequence

70 - 

auacagcuagauaaccaa

 - 87

Get sequence
Deep sequencing330 reads, 46 experiments
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).