Stem-loop sequence rno-mir-9b-1

AccessionMI0015430 (change log)
Previous IDsrno-mir-3597-1
DescriptionRattus norvegicus miR-9b-1 stem-loop
Gene family MIPF0000014; mir-9
Literature search

71 open access papers mention rno-mir-9b-1
(607 sentences)

Stem-loop
     g   u -ua       -a  u   -    c            u     agacuc 
5' gc cag g   ugggguu  uu uua cuuu gguuaucuagcu uauga      c
   || ||| |   |||||||  || ||| |||| |||||||||||| |||||       
3' cg guc c   gccccaa  aa aau gaaa ccaauagaucga auacu      a
     -   - ucc       cc  c   a    -            c     caccac 
Get sequence
Deep sequencing
1628 reads, 0 reads per million, 101 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr2: 187582790-187582897 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-9b-1
rno-mir-9a-1chr2: 187582799-187582887 [+]
rno-mir-9b-1chr2: 187582790-187582897 [-]
Database links

Mature sequence rno-miR-9b-5p

Accession MIMAT0017835
Previous IDsrno-miR-3597-5p
Sequence

27 - 

uucgguuaucuagcuuuau

 - 45

Get sequence
Deep sequencing4425 reads, 102 experiments
Evidence experimental; SOLiD [1]
Predicted targets

Mature sequence rno-miR-9b-3p

Accession MIMAT0017836
Previous IDsrno-miR-3597-3p
Sequence

64 - 

auacagcuagauaaccaa

 - 81

Get sequence
Deep sequencing330 reads, 46 experiments
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).