Stem-loop sequence rno-mir-9b-3

AccessionMI0015426 (change log)
Previous IDsrno-mir-3597-3
DescriptionRattus norvegicus miR-9b-3 stem-loop
Gene family MIPF0000014; mir-9
Literature search

71 open access papers mention rno-mir-9b-3
(607 sentences)

Stem-loop
     a  ca   gu  uu  a   ---a     a    c            u     cg   c 
5' gc cg  gaa  ug  ag guc    uuucu cuuu gguuaucuagcu uauga  gcu u
   || ||  |||  ||  || |||    ||||| |||| |||||||||||| |||||  |||  
3' cg gc  cuu  ac  uc cgg    agaga gaaa ccaauagaucga auacu  cgg g
     -  cg   --  cc  -   gcaa     -    -            c     ca   u 
Get sequence
Deep sequencing
1508 reads, 0 reads per million, 102 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr1: 141229342-141229456 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-9b-3
rno-mir-9a-3chr1: 141229353-141229442 [+]
rno-mir-9b-3chr1: 141229342-141229456 [-]
Database links

Mature sequence rno-miR-9b-5p

Accession MIMAT0017835
Previous IDsrno-miR-3597-5p
Sequence

32 - 

uucgguuaucuagcuuuau

 - 50

Get sequence
Deep sequencing4425 reads, 102 experiments
Evidence experimental; SOLiD [1]
Predicted targets

Mature sequence rno-miR-9b-3p

Accession MIMAT0017836
Previous IDsrno-miR-3597-3p
Sequence

69 - 

auacagcuagauaaccaa

 - 86

Get sequence
Deep sequencing330 reads, 46 experiments
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).