Stem-loop sequence rno-mir-31b

AccessionMI0015412 (change log)
Previous IDsrno-mir-3554
DescriptionRattus norvegicus miR-31b stem-loop
Gene family MIPF0000064; mir-31
Literature search

28 open access papers mention rno-mir-31b
(258 sentences)

Stem-loop
   u  ccaa   g   -----uca   a   a  au     u             ag   cuc 
5'  gg    gcu cug        gac gga ag  ggcaa auguuggcauagc  guu   a
    ||    ||| |||        ||| ||| ||  ||||| |||||||||||||  |||    
3'  cc    cga gac        uug ccu uc  ccguu uacgaccguaucg  caa   g
   a  auaa   g   uuugaacc   a   c  cu     c             -a   cuu 
Get sequence
Deep sequencing
2 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr5: 107206509-107206626 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-31b
rno-mir-31achr5: 107206515-107206620 [+]
rno-mir-31bchr5: 107206509-107206626 [-]
Database links

Mature sequence rno-miR-31b

Accession MIMAT0017816
Previous IDsrno-miR-3554
Sequence

67 - 

cuaugccagcaucuugccu

 - 85

Get sequence
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).