Stem-loop sequence ahy-MIR156b

AccessionMI0015333
DescriptionArachis hypogaea miR156b stem-loop
Gene family MIPF0000008; MIR156
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-156_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

MicroRNA (miRNA) precursor mir-156 is a family of plant non-coding RNA. This microRNA has now been predicted or experimentally confirmed in a range of plant species (MIPF0000008). Animal miRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In plants the precursor sequences may be longer, and the carpel factory (caf) enzyme appears to be involved in processing. In this case the mature sequence comes from the 5' arm of the precursor, and both Arabidopsis thaliana and rice genomes contain a number of related miRNA precursors which give rise to almost identical mature sequences. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA.

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Stem-loop
   -------      acuau   u     u u         -a             -a     u     ---    ga 
5'        ggaggc     ugg agagu g ugacagaag  uagagagcacaaa  gauga augca   uaua  u
          ||||||     ||| ||||| | |||||||||  |||||||||||||  ||||| |||||   ||||   
3'        ucuccg     acu ucuca c acugucuuc  aucucucguguuu  uuauu uacgu   auau  a
   aucuuua      -----   -     - u         ga             cc     u     cug    au 
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Confidence
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Mature sequence ahy-miR156b-5p

Accession MIMAT0016318
Sequence

23 - 

uugacagaagauagagagcac

 - 43

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Evidence experimental; Illumina [1]

Mature sequence ahy-miR156b-3p

Accession MIMAT0016319
Sequence

94 - 

gcucucuaagcuucugucauc

 - 114

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:20047695 "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)" Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ BMC Plant Biol. 10:3(2010).