Stem-loop sequence sja-mir-3489

Accession MI0015313
Description Schistosoma japonicum miR-3489 stem-loop
Stem-loop 
caauu      ca    -     g   c   gacu      gag 
     guuccu  ccuc aauug ugu gcu    cugcac   a
     ||||||  |||| ||||| ||| |||    ||||||   u
     cagggg  ggag uugac aca cgg    ggcgug   g
aacug      ca    c     a   c   ---u      gaa
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Genome context
Coordinates (ASM15177v1) Overlapping transcripts
CABF01025875.1: 5672-5758 [+]
intergenic
Clustered miRNAs
< 10kb from sja-mir-3489
sja-mir-3489 CABF01025875.1: 5672-5758 [+]
sja-mir-3487 CABF01025875.1: 5674-5756 [-]

Mature sequence sja-miR-3489

Accession MIMAT0016298
Sequence

58 -  

gccacaacaguucgaggacg

 - 77

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Evidence experimental; Solexa [1]

References

1
PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).