Stem-loop sequence ppy-mir-487b

Accession

MI0014960

Description

Pongo pygmaeus miR-487b stem-loop

Gene family

MIPF0000018; mir-154

Stem-loop

u       ug        uuau      c u     uuuug 
 ugguacu  gagagugg    cccugu c guucg     c
 |||||||  ||||||||    |||||| | |||||      
 acuauga  uuuucacc    gggaca g uaagc     u
a       cu        uacu      u c     uguac 

Genome context

• Coordinates (PPYG2): 14: 102608591-102608674 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppy-mir-487b

• ppy-mir-376c: 14: 102601818-102601883 [+]
• ppy-mir-376a-2: 14: 102602202-102602281 [+]
• ppy-mir-654: 14: 102602352-102602432 [+]
• ppy-mir-376b: 14: 102602569-102602668 [+]
• ppy-mir-376a-1: 14: 102602915-102602982 [+]
• ppy-mir-300: 14: 102603492-102603574 [+]
• ppy-mir-1185-1: 14: 102605109-102605194 [+]
• ppy-mir-1185-2: 14: 102606330-102606415 [+]
• ppy-mir-381: 14: 102608058-102608132 [+]
• ppy-mir-487b: 14: 102608591-102608674 [+]
• ppy-mir-539: 14: 102609453-102609530 [+]
• ppy-mir-889: 14: 102610033-102610111 [+]
• ppy-mir-544: 14: 102610806-102610896 [+]
• ppy-mir-655: 14: 102611698-102611794 [+]
• ppy-mir-487a: 14: 102614611-102614690 [+]
• ppy-mir-382: 14: 102616490-102616565 [+]
• ppy-mir-134: 14: 102616871-102616943 [+]
• ppy-mir-668: 14: 102617958-102618024 [+]
• ppy-mir-485: 14: 102618120-102618192 [+]

Mature sequence ppy-miR-487b

• Accession: MIMAT0015906
• Sequence: 51 - aaucguacagggucauccacuu - 72
• Evidence: not experimental

References

1. PMID:20214803 "Genome-wide comparative analysis of microRNAs in three non-human primates" Brameier M BMC Res Notes. 3:64(2010).