Stem-loop sequence mmu-mir-3473a

Accession

MI0014706 (change log)

Previous IDs

mmu-mir-3473

Symbol

MGI:Mir3473a

Description

Mus musculus miR-3473 stem-loop

Gene family

MIPF0001230; mir-3473

Literature search

6 open access papers mention mmu-mir-3473a
(86 sentences)

Stem-loop

   c               a     -cc   aaau    uua 
5'  cuguugagccaucuc ccagc   aga    auuu   a
    ||||||||||||||| |||||   |||    ||||   a
3'  gacgacucgguagag ggucg   ucu    uaag   a
   u               a     aau   --gu    uga 

Deep sequencing

5134 reads, 323 reads per million, 122 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 162874918-162874995 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000046551 ; Syap1-001; intron 4

  ENSMUST00000033723 ; Syap1-001; intron 4

Database links

• EntrezGene:Mir3473
• MGI:Mir3473a
• RNAcentral:URS000075DDFD_10090
• miRBase Tracker:MI0014706

Mature sequence mmu-miR-3473a

• Accession: MIMAT0015645
• Previous IDs: mmu-miR-3473
• Sequence: 59 - uggagagauggcucagca - 76
• Deep sequencing: 4459 reads, 97 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000314C08_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3473a
  • miRDB:mmu-miR-3473a
  • microrna.org:mmu-miR-3473a

References

1. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).