Stem-loop sequence ath-MIR841b

Accession

MI0014669 (change log)

Description

Arabidopsis thaliana miR841b stem-loop

Gene family

MIPF0001112; MIR841

Literature search

6 open access papers mention ath-MIR841b
(9 sentences)

Stem-loop

       c       cuaac         ca     c       u          c    aa   c     a       cg cc    g  g     cagu           ca          u       a     u    c       -c  u       -gc   a           a     cu           g          c     g          acaauaucaguauaaa       caaauuag 
5' uccu aucuccu     cgccaacug  aaugc uuggagu auccucuuca uuuc  auc uuguu guguuuu  g  aacu aa aaccu    aguuaggcauu  aggauugaag cguguag caaca cagu gcaccaa  ag accaugu   aga acucuggucuu aguug  ugugaauacga ccacuggaaa ugaaa aaacaaagaa                auuucau        a
   |||| |||||||     |||||||||  ||||| ||||||| |||||||||| ||||  ||| ||||| |||||||  |  |||| || |||||    |||||||||||  |||||||||| ||||||| ||||| |||| |||||||  || |||||||   ||| ||||||||||| |||||  ||||||||||| |||||||||| ||||| ||||||||||                |||||||         
3' agga uagagga     gugguugau  uuacg aaccuca uaggagaagu aaag  uag aacga cacaaag  u  uuga uu uugga    uuaauccguga  uccuaacuuc gcacauc guugu guua cgugguu  uc ugguaca   ucu ugagaucagaa ucaac  acacuuaugcu ggugaucuuu acuuu uuuguuucuu                uaaagua        c
       a       cgcua         ag     u       u          a    aa   u     a       au ca    g  a     uacu           aa          c       a     u    u       ca  -       aca   a           c     au           g          a     a          ----------------       aaaaacau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr4: 2184135-2184629 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR841b

• ath-MIR3932a: chr4: 2179000-2179122 [+]
• ath-MIR841b: chr4: 2184135-2184629 [+]

Database links

• RNAcentral:URS00007A311F_3702
• miRBase Tracker:MI0014669

Mature sequence ath-miR841b-5p

• Accession: MIMAT0017741
• Previous IDs: ath-miR841b
• Sequence: 191 - uacgagccacuggaaacugaa - 211
• Evidence: experimental; Illumina [1]

Mature sequence ath-miR841b-3p

• Accession: MIMAT0017742
• Previous IDs: ath-miR841b*
• Sequence: 286 - caauuucuagugggucguauu - 306
• Evidence: experimental; Illumina [1]

References

1. PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).