Stem-loop sequence aly-MIR3440

Accession MI0014656
Description Arabidopsis lyrata miR3440 stem-loop
Gene family MIPF0001127; MIR3440
Stem-loop 
         ua   cuaa    a     a         c     g            u      c     c             uc c              g     ug        aa 
guuugauau  aua    cauc aaagu gauugcuug cauuu guuaggaauugg cugcgg auuuu cacaagugugguu  c uggccaauccacuu uaaug  uauuuugu  a
|||||||||  |||    |||| ||||| ||||||||| ||||| |||||||||||| |||||| ||||| |||||||||||||  | |||||||||||||| |||||  ||||||||  u
cgagcuaug  ugu    guag uuuua cuaacgaac guaaa cagucuuuaacc gacgcc uaaaa guguucacgccaa  g acugguuaggugaa auuac  guaaaacg  a
         uc   -ucg    g     c         a     a            u      a     c             ga a              g     gu        ca
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Deep sequencing
9 reads, 1 experiments

Mature sequence aly-miR3440-5p

Accession MIMAT0017711
Previous IDs aly-miR3440*
Sequence

80 -  

ugguuucccuggccaauccacu

 - 101

Get sequence
Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR3440-3p

Accession MIMAT0017712
Previous IDs aly-miR3440
Sequence

145 -  

uggauuggucaagagaaccgca

 - 166

Get sequence
Deep sequencing 5 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).