Stem-loop sequence aly-MIR847

Accession MI0014620
Description Arabidopsis lyrata miR847 stem-loop
Gene family MIPF0001171; MIR847
Stem-loop 
      --aag   c     u   u        a     ag      cc   -   a    a       cccccaauuaaaa 
gaauaa     ucu acauc uga gaagagga uggaa  ccgaga  caa auc aaac gaggcgu             u
||||||     ||| ||||| ||| |||||||| |||||  ||||||  ||| ||| |||| |||||||             u
cuuauu     aga uguag acu cuucuccu acuuu  ggcucu  guu uag uuug uucugua             g
      guuua   a     u   u        c     cu      -a   c   c    g       ucuauagugaaug
Get sequence
Deep sequencing
2 reads, 1 experiments

Mature sequence aly-miR847-5p

Accession MIMAT0017637
Previous IDs aly-miR847*
Sequence

17 -  

ucuugaugaagaggaauggaa

 - 37

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR847-3p

Accession MIMAT0017638
Previous IDs aly-miR847
Sequence

127 -  

ucacuccucuucuucaugaug

 - 147

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).