Stem-loop sequence aly-MIR397b

Accession MI0014584
Description Arabidopsis lyrata miR397b stem-loop
Gene family MIPF0000120; MIR397
Stem-loop 
      --uuu   u      c                     aguuuac        uuc    g 
ccuggg     gaa aaacau auugagugcagcguugaugua       uuauuuua   cauu u
||||||     ||| |||||| |||||||||||||||||||||       ||||||||   ||||  
ggacuu     cuu uuugua uaacuuacguugcgacuacau       aguaaaau   guaa u
      uuaau   -      u                     aagacau        uaa    g
Get sequence
Deep sequencing
1 reads, 1 experiments

Mature sequence aly-miR397b-5p

Accession MIMAT0017563
Previous IDs aly-miR397b
Sequence

19 -  

ucauugagugcagcguugaug

 - 39

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR397b-3p

Accession MIMAT0017564
Previous IDs aly-miR397b*
Sequence

94 -  

ucagcguugcauucaauuaug

 - 114

Get sequence
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).