Stem-loop sequence aly-MIR397a

Accession MI0014583
Description Arabidopsis lyrata miR397a stem-loop
Gene family MIPF0000120; MIR397
Stem-loop 
       uu   -au      c                a     u   c    uu       g 
uccugga  uga   gaacau auugagugcagcguug uguaa uuc uuuu  uuucauu u
|||||||  |||   |||||| |||||||||||||||| ||||| ||| ||||  |||||||  
aggacuu  auu   uuugua uaacucgcguugcggc acauu aag aaaa  aagguaa u
       uu   cuu      u                c     u   -    uu       g
Get sequence
Deep sequencing
1 reads, 1 experiments

Mature sequence aly-miR397a-5p

Accession MIMAT0017561
Previous IDs aly-miR397a
Sequence

20 -  

ucauugagugcagcguugaug

 - 40

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR397a-3p

Accession MIMAT0017562
Previous IDs aly-miR397a*
Sequence

88 -  

ccggcguugcgcucaauuaug

 - 108

Get sequence
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).