![]() |
miRBase |
![]() |
![]() |
Stem-loop sequence aly-MIR396b |
|||||
Accession | MI0014582 (change log) | ||||
Description | Arabidopsis lyrata miR396b stem-loop | ||||
Gene family | MIPF0000047; MIR396 | ||||
Stem-loop |
ga aa ag ---- a a u ca uuguuuuuuuuuuucuaaaccaaa 5' gaa ag ga aagauccug gucau uuuuuccacagcuuucuuga cuu cuuuuu uuucca a ||| || || ||||||||| ||||| |||||||||||||||||||| ||| |||||| |||||| a 3' cuu uu cu uuuugggac cagua aaaagggugucgaaagaacu gaa gaagaa aaaggu a ag ac ca uuaa c c - ac uuuacgauuuaaaaucucuagaaa |
||||
Deep sequencing |
| ||||
Confidence |
Annotation confidence: high
| ||||
Genome context |
|
||||
Database links |
|
Mature sequence aly-miR396b-5p |
|
Accession | MIMAT0017559 |
Previous IDs | aly-miR396b |
Sequence |
32 - uuccacagcuuucuugaacuu - 52 |
Deep sequencing | 751 reads, 1 experiments |
Evidence | experimental; Illumina [1], SOLiD [2] |
Database links |
|
Mature sequence aly-miR396b-3p |
|
Accession | MIMAT0017560 |
Previous IDs | aly-miR396b* |
Sequence |
135 - gcucaagaaagcugugggaaa - 155 |
Deep sequencing | 372 reads, 1 experiments |
Evidence | experimental; Illumina [1], SOLiD [2] |
Database links |
|
References |
|
1 |
PMID:20407027
"MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
Plant Cell. 22:1074-1089(2010).
|
2 |
PMID:20407023
"Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
Plant Cell. 22:1090-1103(2010).
|