Stem-loop sequence aly-MIR394a

Accession MI0014574
Description Arabidopsis lyrata miR394a stem-loop
Gene family MIPF0000100; MIR394
Stem-loop 
      --    cuuuaaacuu    -uccuuu   u        g  a     u    u     ca   -      u c gu         c  -g      -u ug   a 
uagauu  ggau          uugu       uca gaggguuu ac aagag uucu acaga  ucu uuggca u u  ccaccuccu cu  uacaug  g  uau u
||||||  ||||          ||||       ||| |||||||| || ||||| |||| |||||  ||| |||||| | |  ||||||||| ||  ||||||  |  |||  
gucuaa  ucug          aaca       agu cucccaaa ug uucuu ggga ugucu  aga aaccgu a a  gguggagga ga  gugugu  u  gua a
      gu    uaacuauuuc    uauaucu   u        a  c     u    u     ag   u      c u ug         a  ag      uu gu   u
Get sequence
Deep sequencing
19 reads, 1 experiments

Mature sequence aly-miR394a-5p

Accession MIMAT0017543
Previous IDs aly-miR394a
Sequence

68 -  

uuggcauucuguccaccucc

 - 87

Get sequence
Deep sequencing 19 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR394a-3p

Accession MIMAT0017544
Previous IDs aly-miR394a*
Sequence

132 -  

agguggguauacugccaaua

 - 151

Get sequence
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).