Stem-loop sequence aly-MIR391

Accession MI0014571
Description Arabidopsis lyrata miR391 stem-loop
Gene family MIPF0001151; MIR391
Stem-loop 
   -aaca   au     u  c          g  c      -----cu      
gca     aag  uugcu cg aggagagaua cg caccac       cuucu 
|||     |||  ||||| || |||||||||| || ||||||       |||| a
cgu     uuc  aacga gc uccucucuau gc guggug       gaaga 
   auaua   cu     u  a          g  a      accaauu
Get sequence
Deep sequencing
202 reads, 1 experiments

Mature sequence aly-miR391-5p

Accession MIMAT0017537
Previous IDs aly-miR391
Sequence

17 -  

uucgcaggagagauagcgcca

 - 37

Get sequence
Deep sequencing 78 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR391-3p

Accession MIMAT0017538
Previous IDs aly-miR391*
Sequence

68 -  

acgguaucucuccuacguagc

 - 88

Get sequence
Deep sequencing 124 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).