Stem-loop sequence aly-MIR169c

Accession MI0014547
Description Arabidopsis lyrata miR169c stem-loop
Gene family MIPF0000037; MIR169_2
Stem-loop 
  c     ua      u     -u     aa    cauu     uc     ag             --ua       auauuuacucuauauucgguuuauauuauggagauuaugcuuuauauauauauauacauaguuuuaauuga 
gu ucauc  aagccu gaaug  gggaa  aggc    guugu  agcca  gaugacuugccgg    gcuuugu                                                                       u
|| |||||  |||||| |||||  |||||  ||||    |||||  |||||  |||||||||||||    |||||||                                                                       u
ca aguag  uucgga cuuac  uccuu  uccg    caacg  ucggu  cuacugaacggcc    cgaaaca                                                                       u
  c     ca      u     uc     -c    ---u     ua     cu             cgaa       aauguguagagugguuguguguauauuuauucauuuaugaaaaagcauaaucuaaugcaugcaugcuuuuu
Get sequence
Deep sequencing
70 reads, 1 experiments

Mature sequence aly-miR169c-5p

Accession MIMAT0017489
Previous IDs aly-miR169c
Sequence

45 -  

cagccaaggaugacuugccgg

 - 65

Get sequence
Deep sequencing 70 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR169c-3p

Accession MIMAT0017490
Previous IDs aly-miR169c*
Sequence

233 -  

ggcaagucaucucuggcuaug

 - 253

Get sequence
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).