Stem-loop sequence aly-MIR319c

Accession MI0014520
Description Arabidopsis lyrata miR319c stem-loop
Gene family MIPF0000010; MIR159
Stem-loop 
auag       uaug   c    uu     a  --------    uau        a              u        gaaa      a gg           g   ac    c   c  aa    c     ag    acg 
    auaaaua    aau gaga  aaaau ga        uaga   agaaggag uucuuucaguccag cauggaua    aagaag g  uagaaauaucu ccg  ucau cau ca  cacu guggu  agaa   a
    |||||||    ||| ||||  ||||| ||        ||||   |||||||| |||||||||||||| ||||||||    |||||| |  ||||||||||| |||  |||| ||| ||  |||| |||||  ||||    
    uauuugu    uua cucu  uuuua cu        aucu   ucuuccuc agggaagucagguu gugucuau    uucuuc c  guuuuuauaga ggc  agua gua gu  guga cgcca  uuuu   u
uaua       -cca   -    uu     -  uuuuuaac    uuu        g              u        ----      - ua           g   gu    a   u  ca    -     aa    aac
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Deep sequencing
1890 reads, 1 experiments

Mature sequence aly-miR319c-5p

Accession MIMAT0017433
Previous IDs aly-miR319c*
Sequence

45 -  

ggagauucuuucaguccaguc

 - 65

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Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR319c-3p

Accession MIMAT0017434
Previous IDs aly-miR319c
Sequence

204 -  

uuggacugaagggagcuccuu

 - 224

Get sequence
Deep sequencing 1889 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).