Stem-loop sequence aly-MIR159b

Accession MI0014516
Description Arabidopsis lyrata miR159b stem-loop
Gene family MIPF0000010; MIR159
Stem-loop 
   a a   a  g            ga       u       uu   ------    ua    -      g  a  c      uc       ----      caaa 
gga g aga ga gaagagcuccuu  aguucaa ggagggu  agc      aggg  aagu aaagcu cu ag uaugga  ccauaaa    ccuuau    u
||| | ||| || ||||||||||||  ||||||| |||||||  |||      ||||  |||| |||||| || || ||||||  |||||||    ||||||     
ccu c ucu cu cuucucgaggga  uuagguu cuucuca  ucg      uccc  uuca uuucga ga uc auaccu  gguauuu    ggaaua    u
   c a   -  a            ag       u       cu   guaauu    ca    c      g  c  u      ua       uuua      aaac
Get sequence
Deep sequencing
7218 reads, 1 experiments

Mature sequence aly-miR159b-5p

Accession MIMAT0017425
Previous IDs aly-miR159b*
Sequence

17 -  

gagcuccuugaaguucaaugg

 - 37

Get sequence
Deep sequencing 105 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR159b-3p

Accession MIMAT0017426
Previous IDs aly-miR159b
Sequence

169 -  

uuuggauugaagggagcucuu

 - 189

Get sequence
Deep sequencing 7083 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).