Stem-loop sequence aly-MIR159a

Accession MI0014515
Description Arabidopsis lyrata miR159a stem-loop
Gene family MIPF0000010; MIR159
Stem-loop 
     aaaa     u   a            ga        c      -u    ------       aga      g  a  c    g uc     -    cu       auaaa 
gagaa    aaaga gga guagagcuccuu  aguucaaa gagagu  gagc      aggguaa   aaagcu cu ag uaug a  ccaua agcc  aauccuu     g
|||||    ||||| ||| ||||||||||||  |||||||| ||||||  ||||      |||||||   |||||| || || |||| |  ||||| ||||  |||||||      
cucuu    uuucu ucu caucucgaggga  uuagguuu uucuca  uucg      ucccguu   uuucga ga uc auac u  gguau uugg  uuaggaa     a
     ccac     -   a            ag        c      uu    guaauu       caa      g  c  u    g uc     a    -u       aaaaa
Get sequence
Deep sequencing
7186 reads, 1 experiments

Mature sequence aly-miR159a-5p

Accession MIMAT0017423
Previous IDs aly-miR159a*
Sequence

23 -  

gagcuccuugaaguucaaacg

 - 43

Get sequence
Deep sequencing 75 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR159a-3p

Accession MIMAT0017424
Previous IDs aly-miR159a
Sequence

183 -  

uuuggauugaagggagcucua

 - 203

Get sequence
Deep sequencing 7087 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).