Stem-loop sequence aly-MIR156d

AccessionMI0014505
DescriptionArabidopsis lyrata miR156d stem-loop
Gene family MIPF0000008; MIR156
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-156_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

MicroRNA (miRNA) precursor mir-156 is a family of plant non-coding RNA. This microRNA has now been predicted or experimentally confirmed in a range of plant species (MIPF0000008). Animal miRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In plants the precursor sequences may be longer, and the carpel factory (caf) enzyme appears to be involved in processing. In this case the mature sequence comes from the 5' arm of the precursor, and both Arabidopsis thaliana and rice genomes contain a number of related miRNA precursors which give rise to almost identical mature sequences. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA.

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Stem-loop
      gg  aaa      --        -            a      g  agu          
5' aug  gg   agaagu  ugacagaa gagagugagcac caaagg ga   uguauagaa 
   |||  ||   ||||||  |||||||| |||||||||||| |||||| ||   |||||||| u
3' uac  uc   ucuuca  acugucuu cucucacucgug guuuuc uu   auauguuuu 
      uu  --c      au        u            c      g  ggu          
Get sequence
Deep sequencing
237 reads, 9.86e+03 reads per million, 1 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (v1.0) Overlapping transcripts
GL348718.1: 4353135-4353252 [-]
intergenic
Database links

Mature sequence aly-miR156d-5p

Accession MIMAT0017403
Previous IDsaly-miR156d
Sequence

17 - 

ugacagaagagagugagcac

 - 36

Get sequence
Deep sequencing181 reads, 1 experiments
Evidence experimental; Illumina [1], SOLiD [2]

Mature sequence aly-miR156d-3p

Accession MIMAT0017404
Previous IDsaly-miR156d*
Sequence

84 - 

gcucacucucuuucugucaua

 - 104

Get sequence
Deep sequencing23 reads, 1 experiments
Evidence experimental; Illumina [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2