Stem-loop sequence bmo-mir-3396

Accession MI0014459
Description Bombyx mori miR-3396 stem-loop
Stem-loop 
uuc    -  uuc      uu u   uc    a  uc g c    -uaa     cuucaa  uu uu   c   u 
   ggau cc   uccagu  c auu  acgg cg  a g gauu    ugcgg      ag  g  ggg auc u
   |||| ||   ||||||  | |||  |||| ||  | | ||||    |||||      ||  |  ||| |||  
   ccua gg   gggucg  g ugg  ugcc gc  u c cugg    acgcc      uc  c  cuc ugg c
--c    a  --u      uu c   gc    g  ga g u    cgug     --ccuc  cu uc   u   g
Get sequence
Deep sequencing
15 reads, 2 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2686: 230726-230869 [-]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-3396
bmo-mir-3396 nscaf2686: 230726-230869 [-]
bmo-mir-3395 nscaf2686: 229253-229374 [-]
bmo-mir-3394 nscaf2686: 224567-224688 [-]

Mature sequence bmo-miR-3396

Accession MIMAT0015600
Sequence

13 -  

uccaguuucuauuucacggacguca

 - 37

Get sequence
Evidence experimental; SOLID [1]

References

1
PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).