Stem-loop sequence bmo-mir-2733a-3

AccessionMI0014453 (change log)
DescriptionBombyx mori miR-2733a-3 stem-loop
Gene family MIPF0000766; mir-2733
Literature search

1 open access papers mention bmo-mir-2733a-3
(4 sentences)

Stem-loop
   gu       -  gaaa  uc     -     u ca           g        ucaucucaucacgcc  cau 
5'   ugauaug ug    au  uauca cuggg g  ugaugauugug uagagaga               gc   c
     ||||||| ||    ||  ||||| ||||| |  ||||||||||| ||||||||               ||    
3'   acuauau ac    ug  auagu gacuc c  acuacugacau aucucucu               ug   a
   -c       u  aaug  -u     u     u ac           a        uuaucuucucuacaa  uac 
Get sequence
Deep sequencing
14 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (ASM15162v1; GCA_000151625.1) Overlapping transcripts
NW_004581684.1: 346598-346745 [-]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2733a-3
bmo-mir-9dNW_004581684.1: 354559-354643 [-]
bmo-mir-2733cNW_004581684.1: 353724-353805 [-]
bmo-mir-2733gNW_004581684.1: 347847-347958 [-]
bmo-mir-2733a-1NW_004581684.1: 347677-347760 [-]
bmo-mir-2851-1NW_004581684.1: 347670-347768 [+]
bmo-mir-2733b-2NW_004581684.1: 347220-347348 [-]
bmo-mir-2733hNW_004581684.1: 347062-347142 [-]
bmo-mir-2733b-1NW_004581684.1: 346939-347018 [-]
bmo-mir-2733a-3NW_004581684.1: 346598-346745 [-]
bmo-mir-2851-2NW_004581684.1: 346562-346660 [+]
bmo-mir-2733a-2NW_004581684.1: 346489-346605 [-]
bmo-mir-2733fNW_004581684.1: 346080-346197 [-]
bmo-mir-2733iNW_004581684.1: 344891-344998 [-]
bmo-mir-2733e-1NW_004581684.1: 342896-342993 [-]
bmo-mir-2733e-2NW_004581684.1: 342566-342664 [-]
Database links

Mature sequence bmo-miR-2733a-5p

Accession MIMAT0012611
Previous IDsbmo-miR-2733a
Sequence

22 - 

ucacugggugcaugaugauugu

 - 43

Get sequence
Deep sequencing43 reads, 2 experiments
Evidence experimental; SOLID [1]

Mature sequence bmo-miR-2733a-3p

Accession MIMAT0015593
Previous IDsbmo-miR-2733a*
Sequence

108 - 

agucaucacacucucaguugaua

 - 130

Get sequence
Evidence experimental; SOLID [1]

References

1
PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).