Stem-loop sequence hsa-mir-3199-2

Accession

MI0014248

Description

Homo sapiens miR-3199-2 stem-loop

Gene family

MIPF0001026; mir-3199

Stem-loop

        c                              u  c 
gugacucc agggacugccuuaggagaaaguuucuggaa gu a
|||||||| |||||||||||||||||||||||||||||| ||  
cacugagg ucccugacggaauccucuuucaaagaccuu ca g
        -                              -  a 

Deep sequencing

27 reads, 11 experiments

Genome context

• Coordinates (GRCh37.p5): chr22: 28316514-28316599 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000320716 ; RP3-477H23.3-001; intron 1

  OTTHUMT00000320717 ; RP3-477H23.3-002; intron 1

  OTTHUMT00000320718 ; RP3-477H23.3-003; intron 1

  OTTHUMT00000320721 ; RP3-477H23.3-006; intron 1

  OTTHUMT00000320722 ; RP3-477H23.3-007; intron 1

  OTTHUMT00000320723 ; RP3-477H23.3-008; intron 1

  OTTHUMT00000320724 ; RP3-477H23.3-009; intron 1

  OTTHUMT00000320725 ; RP3-477H23.3-010; intron 1

  OTTHUMT00000320726 ; RP3-477H23.3-011; intron 1

  OTTHUMT00000320727 ; RP3-477H23.3-012; intron 1

  OTTHUMT00000320729 ; RP3-477H23.3-014; intron 1

  OTTHUMT00000320730 ; RP3-477H23.3-015; intron 1

  OTTHUMT00000320731 ; RP3-477H23.3-016; intron 1

  OTTHUMT00000320732 ; RP3-477H23.3-017; intron 1

  OTTHUMT00000320734 ; RP3-477H23.3-019; intron 1

  OTTHUMT00000320716 ; RP3-477H23.3-001; intron 1

  OTTHUMT00000320717 ; RP3-477H23.3-002; intron 1

  OTTHUMT00000320718 ; RP3-477H23.3-003; intron 1

  OTTHUMT00000320721 ; RP3-477H23.3-006; intron 1

  OTTHUMT00000320722 ; RP3-477H23.3-007; intron 1

  OTTHUMT00000320723 ; RP3-477H23.3-008; intron 1

  OTTHUMT00000320724 ; RP3-477H23.3-009; intron 1

  OTTHUMT00000320725 ; RP3-477H23.3-010; intron 1

  OTTHUMT00000320726 ; RP3-477H23.3-011; intron 1

  OTTHUMT00000320727 ; RP3-477H23.3-012; intron 1

  OTTHUMT00000320729 ; RP3-477H23.3-014; intron 1

  OTTHUMT00000320730 ; RP3-477H23.3-015; intron 1

  OTTHUMT00000320731 ; RP3-477H23.3-016; intron 1

  OTTHUMT00000320732 ; RP3-477H23.3-017; intron 1

  OTTHUMT00000320734 ; RP3-477H23.3-019; intron 1

  OTTHUMT00000320721 ; TTC28-AS1-006; intron 1

  OTTHUMT00000320722 ; TTC28-AS1-007; intron 1

  OTTHUMT00000320717 ; TTC28-AS1-002; intron 1

  OTTHUMT00000320716 ; TTC28-AS1-001; intron 1

  OTTHUMT00000320723 ; TTC28-AS1-008; intron 1

  OTTHUMT00000320724 ; TTC28-AS1-009; intron 1

  OTTHUMT00000320725 ; TTC28-AS1-010; intron 1

  OTTHUMT00000320730 ; TTC28-AS1-015; intron 1

  OTTHUMT00000320727 ; TTC28-AS1-012; intron 1

  OTTHUMT00000320726 ; TTC28-AS1-011; intron 1

  OTTHUMT00000320718 ; TTC28-AS1-003; intron 1

  OTTHUMT00000320729 ; TTC28-AS1-014; intron 1

  OTTHUMT00000320732 ; TTC28-AS1-017; intron 1

  OTTHUMT00000320734 ; TTC28-AS1-019; intron 1

  OTTHUMT00000320731 ; TTC28-AS1-016; intron 1

  OTTHUMT00000320728 ; RP3-477H23.3-013; intron 2

  OTTHUMT00000320728 ; RP3-477H23.3-013; intron 2

  OTTHUMT00000320728 ; TTC28-AS1-013; intron 2

  ENST00000454741 ; TTC28-AS1-001; intron 1

  ENST00000419253 ; TTC28-AS1-002; intron 1

  ENST00000437713 ; TTC28-AS1-003; intron 1

  ENST00000430853 ; TTC28-AS1-006; intron 1

  ENST00000424161 ; TTC28-AS1-007; intron 1

  ENST00000453632 ; TTC28-AS1-008; intron 1

  ENST00000436996 ; TTC28-AS1-009; intron 1

  ENST00000454996 ; TTC28-AS1-010; intron 1

  ENST00000434221 ; TTC28-AS1-011; intron 1

  ENST00000435348 ; TTC28-AS1-012; intron 1

  ENST00000428858 ; TTC28-AS1-014; intron 1

  ENST00000428818 ; TTC28-AS1-015; intron 1

  ENST00000425112 ; TTC28-AS1-016; intron 1

  ENST00000430525 ; TTC28-AS1-017; intron 1

  ENST00000452612 ; TTC28-AS1-019; intron 1

  ENST00000454741 ; TTC28-AS1-001; intron 1

  ENST00000419253 ; TTC28-AS1-002; intron 1

  ENST00000437713 ; TTC28-AS1-003; intron 1

  ENST00000430853 ; TTC28-AS1-006; intron 1

  ENST00000424161 ; TTC28-AS1-007; intron 1

  ENST00000453632 ; TTC28-AS1-008; intron 1

  ENST00000436996 ; TTC28-AS1-009; intron 1

  ENST00000454996 ; TTC28-AS1-010; intron 1

  ENST00000434221 ; TTC28-AS1-011; intron 1

  ENST00000435348 ; TTC28-AS1-012; intron 1

  ENST00000428858 ; TTC28-AS1-014; intron 1

  ENST00000428818 ; TTC28-AS1-015; intron 1

  ENST00000425112 ; TTC28-AS1-016; intron 1

  ENST00000430525 ; TTC28-AS1-017; intron 1

  ENST00000452612 ; TTC28-AS1-019; intron 1

  ENST00000430853 ; TTC28-AS1-006; intron 1

  ENST00000424161 ; TTC28-AS1-007; intron 1

  ENST00000419253 ; TTC28-AS1-002; intron 1

  ENST00000454741 ; TTC28-AS1-001; intron 1

  ENST00000453632 ; TTC28-AS1-008; intron 1

  ENST00000436996 ; TTC28-AS1-009; intron 1

  ENST00000454996 ; TTC28-AS1-010; intron 1

  ENST00000428818 ; TTC28-AS1-015; intron 1

  ENST00000435348 ; TTC28-AS1-012; intron 1

  ENST00000434221 ; TTC28-AS1-011; intron 1

  ENST00000437713 ; TTC28-AS1-003; intron 1

  ENST00000428858 ; TTC28-AS1-014; intron 1

  ENST00000430525 ; TTC28-AS1-017; intron 1

  ENST00000452612 ; TTC28-AS1-019; intron 1

  ENST00000425112 ; TTC28-AS1-016; intron 1

  ENST00000417381 ; TTC28-AS1-013; intron 2

  ENST00000417381 ; TTC28-AS1-013; intron 2

  ENST00000417381 ; TTC28-AS1-013; intron 2

  antisense

  ENST00000582434 ; MIR3199-2-201; exon 1

Clustered miRNAs

< 10kb from hsa-mir-3199-2

• hsa-mir-3199-1: chr22: 28316513-28316600 [-]
• hsa-mir-3199-2: chr22: 28316514-28316599 [+]

Database links

• ENTREZGENE: 100422998;MIR3199-2

Mature sequence hsa-miR-3199

• Accession: MIMAT0015084
• Sequence: 10 - agggacugccuuaggagaaaguu - 32
• Deep sequencing: 46 reads, 9 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3199
  • MICRORNA.ORG:hsa-miR-3199
  • MIRDB:hsa-miR-3199
  • RNA22-HSA:hsa-miR-3199
  • TARGETMINER:hsa-miR-3199

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).