Stem-loop sequence hsa-mir-3199-1

Accession

MI0014247

Description

Homo sapiens miR-3199-1 stem-loop

Gene family

MIPF0001026; mir-3199

Stem-loop

         -                              -  u 
ggugacucc agggacugccuuaggagaaaguuucuggaa gu c
||||||||| |||||||||||||||||||||||||||||| ||  
ucacugagg ucccugacggaauccucuuucaaagaccuu ca u
         g                              a  g 

Deep sequencing

23 reads, 8 experiments

Genome context

• Coordinates (GRCh37.p5): chr22: 28316513-28316600 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000320716 ; RP3-477H23.3-001; intron 1

  OTTHUMT00000320717 ; RP3-477H23.3-002; intron 1

  OTTHUMT00000320718 ; RP3-477H23.3-003; intron 1

  OTTHUMT00000320721 ; RP3-477H23.3-006; intron 1

  OTTHUMT00000320722 ; RP3-477H23.3-007; intron 1

  OTTHUMT00000320723 ; RP3-477H23.3-008; intron 1

  OTTHUMT00000320724 ; RP3-477H23.3-009; intron 1

  OTTHUMT00000320725 ; RP3-477H23.3-010; intron 1

  OTTHUMT00000320726 ; RP3-477H23.3-011; intron 1

  OTTHUMT00000320727 ; RP3-477H23.3-012; intron 1

  OTTHUMT00000320729 ; RP3-477H23.3-014; intron 1

  OTTHUMT00000320730 ; RP3-477H23.3-015; intron 1

  OTTHUMT00000320731 ; RP3-477H23.3-016; intron 1

  OTTHUMT00000320732 ; RP3-477H23.3-017; intron 1

  OTTHUMT00000320734 ; RP3-477H23.3-019; intron 1

  OTTHUMT00000320716 ; RP3-477H23.3-001; intron 1

  OTTHUMT00000320717 ; RP3-477H23.3-002; intron 1

  OTTHUMT00000320718 ; RP3-477H23.3-003; intron 1

  OTTHUMT00000320721 ; RP3-477H23.3-006; intron 1

  OTTHUMT00000320722 ; RP3-477H23.3-007; intron 1

  OTTHUMT00000320723 ; RP3-477H23.3-008; intron 1

  OTTHUMT00000320724 ; RP3-477H23.3-009; intron 1

  OTTHUMT00000320725 ; RP3-477H23.3-010; intron 1

  OTTHUMT00000320726 ; RP3-477H23.3-011; intron 1

  OTTHUMT00000320727 ; RP3-477H23.3-012; intron 1

  OTTHUMT00000320729 ; RP3-477H23.3-014; intron 1

  OTTHUMT00000320730 ; RP3-477H23.3-015; intron 1

  OTTHUMT00000320731 ; RP3-477H23.3-016; intron 1

  OTTHUMT00000320732 ; RP3-477H23.3-017; intron 1

  OTTHUMT00000320734 ; RP3-477H23.3-019; intron 1

  OTTHUMT00000320721 ; TTC28-AS1-006; intron 1

  OTTHUMT00000320722 ; TTC28-AS1-007; intron 1

  OTTHUMT00000320717 ; TTC28-AS1-002; intron 1

  OTTHUMT00000320716 ; TTC28-AS1-001; intron 1

  OTTHUMT00000320723 ; TTC28-AS1-008; intron 1

  OTTHUMT00000320724 ; TTC28-AS1-009; intron 1

  OTTHUMT00000320725 ; TTC28-AS1-010; intron 1

  OTTHUMT00000320730 ; TTC28-AS1-015; intron 1

  OTTHUMT00000320727 ; TTC28-AS1-012; intron 1

  OTTHUMT00000320726 ; TTC28-AS1-011; intron 1

  OTTHUMT00000320718 ; TTC28-AS1-003; intron 1

  OTTHUMT00000320729 ; TTC28-AS1-014; intron 1

  OTTHUMT00000320732 ; TTC28-AS1-017; intron 1

  OTTHUMT00000320734 ; TTC28-AS1-019; intron 1

  OTTHUMT00000320731 ; TTC28-AS1-016; intron 1

  OTTHUMT00000320728 ; RP3-477H23.3-013; intron 2

  OTTHUMT00000320728 ; RP3-477H23.3-013; intron 2

  OTTHUMT00000320728 ; TTC28-AS1-013; intron 2

  ENST00000454741 ; TTC28-AS1-001; intron 1

  ENST00000419253 ; TTC28-AS1-002; intron 1

  ENST00000437713 ; TTC28-AS1-003; intron 1

  ENST00000430853 ; TTC28-AS1-006; intron 1

  ENST00000424161 ; TTC28-AS1-007; intron 1

  ENST00000453632 ; TTC28-AS1-008; intron 1

  ENST00000436996 ; TTC28-AS1-009; intron 1

  ENST00000454996 ; TTC28-AS1-010; intron 1

  ENST00000434221 ; TTC28-AS1-011; intron 1

  ENST00000435348 ; TTC28-AS1-012; intron 1

  ENST00000428858 ; TTC28-AS1-014; intron 1

  ENST00000428818 ; TTC28-AS1-015; intron 1

  ENST00000425112 ; TTC28-AS1-016; intron 1

  ENST00000430525 ; TTC28-AS1-017; intron 1

  ENST00000452612 ; TTC28-AS1-019; intron 1

  ENST00000454741 ; TTC28-AS1-001; intron 1

  ENST00000419253 ; TTC28-AS1-002; intron 1

  ENST00000437713 ; TTC28-AS1-003; intron 1

  ENST00000430853 ; TTC28-AS1-006; intron 1

  ENST00000424161 ; TTC28-AS1-007; intron 1

  ENST00000453632 ; TTC28-AS1-008; intron 1

  ENST00000436996 ; TTC28-AS1-009; intron 1

  ENST00000454996 ; TTC28-AS1-010; intron 1

  ENST00000434221 ; TTC28-AS1-011; intron 1

  ENST00000435348 ; TTC28-AS1-012; intron 1

  ENST00000428858 ; TTC28-AS1-014; intron 1

  ENST00000428818 ; TTC28-AS1-015; intron 1

  ENST00000425112 ; TTC28-AS1-016; intron 1

  ENST00000430525 ; TTC28-AS1-017; intron 1

  ENST00000452612 ; TTC28-AS1-019; intron 1

  ENST00000430853 ; TTC28-AS1-006; intron 1

  ENST00000424161 ; TTC28-AS1-007; intron 1

  ENST00000419253 ; TTC28-AS1-002; intron 1

  ENST00000454741 ; TTC28-AS1-001; intron 1

  ENST00000453632 ; TTC28-AS1-008; intron 1

  ENST00000436996 ; TTC28-AS1-009; intron 1

  ENST00000454996 ; TTC28-AS1-010; intron 1

  ENST00000428818 ; TTC28-AS1-015; intron 1

  ENST00000435348 ; TTC28-AS1-012; intron 1

  ENST00000434221 ; TTC28-AS1-011; intron 1

  ENST00000437713 ; TTC28-AS1-003; intron 1

  ENST00000428858 ; TTC28-AS1-014; intron 1

  ENST00000430525 ; TTC28-AS1-017; intron 1

  ENST00000452612 ; TTC28-AS1-019; intron 1

  ENST00000425112 ; TTC28-AS1-016; intron 1

  ENST00000417381 ; TTC28-AS1-013; intron 2

  ENST00000417381 ; TTC28-AS1-013; intron 2

  ENST00000417381 ; TTC28-AS1-013; intron 2

Clustered miRNAs

< 10kb from hsa-mir-3199-1

• hsa-mir-3199-2: chr22: 28316514-28316599 [+]
• hsa-mir-3199-1: chr22: 28316513-28316600 [-]

Database links

• ENTREZGENE: 100423034;MIR3199-1

Mature sequence hsa-miR-3199

• Accession: MIMAT0015084
• Sequence: 10 - agggacugccuuaggagaaaguu - 32
• Deep sequencing: 46 reads, 9 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3199
  • MICRORNA.ORG:hsa-miR-3199
  • MIRDB:hsa-miR-3199
  • RNA22-HSA:hsa-miR-3199
  • TARGETMINER:hsa-miR-3199

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).