Stem-loop sequence hsa-mir-3194

Accession

MI0014239

Description

Homo sapiens miR-3194 stem-loop

Stem-loop

        gg     ccac   g        g  c 
agguggca  gccag    cag agggcugc ug c
||||||||  |||||    ||| |||||||| || a
uccacugu  cgguc    guc ucucgacg gc c
        ga     acuc   g        g  c 

Deep sequencing

14 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chr20: 50069442-50069514 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000079729 ; NFATC2-001; intron 6

  OTTHUMT00000079730 ; NFATC2-002; intron 6

  OTTHUMT00000079729 ; NFATC2-001; intron 6

  OTTHUMT00000079730 ; NFATC2-002; intron 6

  OTTHUMT00000079729 ; NFATC2-001; intron 6

  OTTHUMT00000079730 ; NFATC2-002; intron 6

  ENST00000371567 ; NFATC2-201; intron 4

  ENST00000371567 ; NFATC2-201; intron 4

  ENST00000371564 ; NFATC2-001; intron 6

  ENST00000396009 ; NFATC2-002; intron 6

  ENST00000414705 ; NFATC2-202; intron 6

  ENST00000371564 ; NFATC2-001; intron 6

  ENST00000396009 ; NFATC2-002; intron 6

  ENST00000414705 ; NFATC2-202; intron 6

  ENST00000371564 ; NFATC2-001; intron 6

  ENST00000396009 ; NFATC2-002; intron 6

  ENST00000414705 ; NFATC2-201; intron 6

Database links

• ENTREZGENE: 100422889;MIR3194

Mature sequence hsa-miR-3194-5p

• Accession: MIMAT0015078
• Previous IDs: hsa-miR-3194
• Sequence: 10 - ggccagccaccaggagggcug - 30
• Deep sequencing: 14 reads, 3 experiments
• Evidence: experimental; Solexa [1-2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3194-5p
  • MICRORNA.ORG:hsa-miR-3194-5p
  • MIRDB:hsa-miR-3194-5p
  • RNA22-HSA:hsa-miR-3194-5p
  • TARGETMINER:hsa-miR-3194-5p

Mature sequence hsa-miR-3194-3p

• Accession: MIMAT0019218
• Sequence: 45 - agcucugcugcucacuggcagu - 66
• Evidence: experimental; Solexa [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3194-3p
  • MIRDB:hsa-miR-3194-3p
  • TARGETMINER:hsa-miR-3194-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).