Stem-loop sequence hsa-mir-3189

Accession

MI0014233

Description

Homo sapiens miR-3189 stem-loop

Stem-loop

  c  a           ugu    -u   ----    a 
gc uc guugccccauc   gccc  ggg    uagg a
|| || |||||||||||   ||||  |||    |||| u
cg ag cgaugggguag   uggg  ccc    gucc a
  u  c           -uc    uu   cuag    u 

Deep sequencing

21 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chr19: 18497372-18497444 [+]
• Overlapping transcripts:

  sense

  ENST00000252809 ; GDF15-201; intron 1

  ENST00000252809 ; GDF15-201; intron 1

  ENST00000252809 ; GDF15-201; intron 1

Database links

• ENTREZGENE: 100422943;MIR3189

Mature sequence hsa-miR-3189-5p

• Accession: MIMAT0019217
• Sequence: 9 - ugccccaucugugcccuggguagga - 33
• Deep sequencing: 3 reads, 2 experiments
• Evidence: experimental; Solexa [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3189-5p
  • MIRDB:hsa-miR-3189-5p
  • TARGETMINER:hsa-miR-3189-5p

Mature sequence hsa-miR-3189-3p

• Accession: MIMAT0015071
• Previous IDs: hsa-miR-3189
• Sequence: 46 - cccuugggucugaugggguag - 66
• Deep sequencing: 18 reads, 2 experiments
• Evidence: experimental; Solexa [1-2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3189-3p
  • MICRORNA.ORG:hsa-miR-3189-3p
  • MIRDB:hsa-miR-3189-3p
  • RNA22-HSA:hsa-miR-3189-3p
  • TARGETMINER:hsa-miR-3189-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).