Stem-loop sequence hsa-mir-3181

Accession

MI0014223

Description

Homo sapiens miR-3181 stem-loop

Stem-loop

        au       --     g c      uua 
cggcgacc  cgggccc  ucggc c ggcccg   g
||||||||  |||||||  ||||| | ||||||   u
gccguugg  gcccggg  ggccg g ccgggc   u
        gc       cc     a c      ccg 

Deep sequencing

8 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr16: 50776216-50776288 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000422989 ; CYLD-011; intron 1

  OTTHUMT00000422990 ; CYLD-001; intron 1

  OTTHUMT00000422991 ; CYLD-004; intron 1

  OTTHUMT00000422993 ; CYLD-006; intron 1

  OTTHUMT00000422994 ; CYLD-002; intron 1

  OTTHUMT00000422995 ; CYLD-007; intron 1

  OTTHUMT00000422996 ; CYLD-012; intron 1

  OTTHUMT00000422997 ; CYLD-005; intron 1

  OTTHUMT00000422989 ; CYLD-011; intron 1

  OTTHUMT00000422990 ; CYLD-001; intron 1

  OTTHUMT00000422991 ; CYLD-004; intron 1

  OTTHUMT00000422992 ; CYLD-003; intron 1

  OTTHUMT00000422993 ; CYLD-006; intron 1

  OTTHUMT00000422994 ; CYLD-002; intron 1

  OTTHUMT00000422995 ; CYLD-007; intron 1

  OTTHUMT00000422996 ; CYLD-012; intron 1

  OTTHUMT00000422997 ; CYLD-005; intron 1

  ENST00000540145 ; CYLD-204; intron 1

  ENST00000311559 ; CYLD-201; intron 1

  ENST00000427738 ; CYLD-203; intron 1

  ENST00000398568 ; CYLD-202; intron 1

  ENST00000569681 ; CYLD-011; intron 1

  ENST00000569418 ; CYLD-001; intron 1

  ENST00000569891 ; CYLD-004; intron 1

  ENST00000564326 ; CYLD-006; intron 1

  ENST00000566206 ; CYLD-002; intron 1

  ENST00000566679 ; CYLD-007; intron 1

  ENST00000564634 ; CYLD-012; intron 1

  ENST00000398568 ; CYLD-005; intron 1

  ENST00000540145 ; CYLD-202; intron 1

  ENST00000311559 ; CYLD-201; intron 1

  ENST00000569681 ; CYLD-011; intron 1

  ENST00000569418 ; CYLD-001; intron 1

  ENST00000569891 ; CYLD-004; intron 1

  ENST00000311559 ; CYLD-003; intron 1

  ENST00000564326 ; CYLD-006; intron 1

  ENST00000566206 ; CYLD-002; intron 1

  ENST00000566679 ; CYLD-007; intron 1

  ENST00000564634 ; CYLD-012; intron 1

  ENST00000398568 ; CYLD-005; intron 1

  ENST00000540145 ; CYLD-201; intron 1

  antisense

  OTTHUMT00000422988 ; RP11-327F22.1-001; intron 1

  OTTHUMT00000422988 ; RP11-327F22.1-001; intron 1

  ENST00000563315 ; RP11-327F22.1-001; intron 1

  ENST00000563315 ; RP11-327F22.1-001; intron 1

Database links

• ENTREZGENE: 100422972;MIR3181

Mature sequence hsa-miR-3181

• Accession: MIMAT0015061
• Sequence: 9 - aucgggcccucggcgccgg - 27
• Deep sequencing: 6 reads, 2 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3181
  • MICRORNA.ORG:hsa-miR-3181
  • MIRDB:hsa-miR-3181
  • RNA22-HSA:hsa-miR-3181
  • TARGETMINER:hsa-miR-3181

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).