Stem-loop sequence hsa-mir-548w

Accession

MI0014222

Description

Homo sapiens miR-548w stem-loop

Gene family

MIPF0000317; mir-548

Stem-loop

                 c  c  u       uuuca 
gguuggugcaaaaguaa ug gg uuuugcc     a
||||||||||||||||| || || |||||||      
cuaaccacguuuucauu ac cc aaaacgg     c
                 a  a  c       uaaua 

Deep sequencing

52 reads, 19 experiments

Genome context

• Coordinates (GRCh37.p5): chr16: 26036558-26036631 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000133286 ; HS3ST4-001; intron 1

  OTTHUMT00000276993 ; HS3ST4-002; intron 1

  OTTHUMT00000133286 ; HS3ST4-001; intron 1

  OTTHUMT00000276993 ; HS3ST4-002; intron 1

  OTTHUMT00000133286 ; HS3ST4-001; intron 1

  OTTHUMT00000276993 ; HS3ST4-002; intron 1

  ENST00000331351 ; HS3ST4-001; intron 1

  ENST00000475436 ; HS3ST4-002; intron 1

  ENST00000331351 ; HS3ST4-001; intron 1

  ENST00000475436 ; HS3ST4-002; intron 1

  ENST00000331351 ; HS3ST4-001; intron 1

  ENST00000475436 ; HS3ST4-002; intron 1

Database links

• ENTREZGENE: 100422923;MIR548W

Mature sequence hsa-miR-548w

• Accession: MIMAT0015060
• Sequence: 10 - aaaaguaacugcgguuuuugccu - 32
• Deep sequencing: 28 reads, 11 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548w
  • MICRORNA.ORG:hsa-miR-548w
  • MIRDB:hsa-miR-548w
  • RNA22-HSA:hsa-miR-548w
  • TARGETMINER:hsa-miR-548w

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).