Stem-loop sequence hsa-mir-3180-3

Accession

MI0014217

Description

Homo sapiens miR-3180-3 stem-loop

Gene family

MIPF0000894; mir-3180

Stem-loop

cagu   ac      a      a  c              ----------  c 
    gcg  gggcgg gcuucc ga gcuccgccccacgu          cg a
    |||  |||||| |||||| || ||||||||||||||          ||  
    cgu  cccgcc cggagg cu cgaggcggggugcg          gc u
--gu   --      c      c  u              aaagggcccc  g 

Deep sequencing

2966 reads, 13 experiments

Genome context

• Coordinates (GRCh37.p5): chr16: 18496035-18496128 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000409525 ; RP11-1212A22.5-001; exon 1

  OTTHUMT00000409525 ; RP11-1212A22.5-001; exon 1

  OTTHUMT00000409525 ; MIR3180-3-001; exon 1

  ENST00000549796 ; RP11-1212A22.5-001; exon 1

  ENST00000549796 ; MIR3180-2-001; exon 1

  ENST00000549796 ; MIR3180-3-001; exon 1

Clustered miRNAs

< 10kb from hsa-mir-3180-3

• hsa-mir-3179-3: chr16: 18505751-18505834 [-]
• hsa-mir-3180-3: chr16: 18496035-18496128 [-]

Database links

• ENTREZGENE: 100422836;MIR3180-3

Mature sequence hsa-miR-3180-5p

• Accession: MIMAT0015057
• Sequence: 18 - cuuccagacgcuccgccccacgucg - 42
• Deep sequencing: 681 reads, 5 experiments
• Evidence: experimental; Solexa [1,3]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3180-5p
  • MICRORNA.ORG:hsa-miR-3180-5p
  • MIRDB:hsa-miR-3180-5p
  • RNA22-HSA:hsa-miR-3180-5p
  • TARGETMINER:hsa-miR-3180-5p

Mature sequence hsa-miR-3180-3p

• Accession: MIMAT0015058
• Sequence: 62 - uggggcggagcuuccggaggcc - 83
• Deep sequencing: 8213 reads, 12 experiments
• Evidence: experimental; Solexa [1-3]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3180-3p
  • MICRORNA.ORG:hsa-miR-3180-3p
  • MIRDB:hsa-miR-3180-3p
  • RNA22-HSA:hsa-miR-3180-3p
  • TARGETMINER:hsa-miR-3180-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).