Stem-loop sequence hsa-mir-3180-2

Accession MI0014215
Description Homo sapiens miR-3180-2 stem-loop
Gene family MIPF0000894; mir-3180
Stem-loop 
gcgac      a      a  c              ----------  c 
     gggcgg gcuucc ga gcuccgccccacgu          cg a
     |||||| |||||| || ||||||||||||||          ||  
     cccgcc cggagg cu cgaggcggggugcg          gc u
--cgu      c      c  u              aaagggcccc  g
Get sequence
Deep sequencing
2968 reads, 13 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr16: 16403736-16403823 [+]
sense
ENST00000581748 ; hsa-mir-3180-3.1-201; exon 1
antisense
OTTHUMT00000409530 ; RP11-958N24.3-001; exon 1
OTTHUMT00000409530 ; RP11-958N24.3-001; exon 1
OTTHUMT00000409530 ; MIR3180-2-001; exon 1
ENST00000546612 ; RP11-958N24.3-001; exon 1
ENST00000546612 ; MIR3180-1-001; exon 1
ENST00000546612 ; MIR3180-2-001; exon 1
Clustered miRNAs
< 10kb from hsa-mir-3180-2
hsa-mir-3179-2 chr16: 16394016-16394099 [+]
hsa-mir-3670-2 chr16: 16400227-16400291 [+]
hsa-mir-3180-2 chr16: 16403736-16403823 [+]
Database links

Mature sequence hsa-miR-3180-5p

Accession MIMAT0015057
Sequence

14 -  

cuuccagacgcuccgccccacgucg

 - 38

Get sequence
Deep sequencing 681 reads, 5 experiments
Evidence experimental; Solexa [1-2]
Predicted targets

Mature sequence hsa-miR-3180-3p

Accession MIMAT0015058
Sequence

58 -  

uggggcggagcuuccggaggcc

 - 79

Get sequence
Deep sequencing 8213 reads, 12 experiments
Evidence experimental; Solexa [1-2]
Predicted targets

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).